Detail information of GWHGAAEX006648/evm.TU.scaffold_188.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-170 | FOG: PPR repeat |
| nr | gi|672185559|ref|XP_008812854.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q1PFQ9|PPR62_ARATH | 2.00E-170 | Pentatricopeptide repeat-containing protein At1g28690, mitochondrial (Precursor) |
| trEMBL | tr|F6HM76|F6HM76_VITVI | 1.00E-175 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB55664.1} |
| trEMBL | tr|F6HM76|F6HM76_VITVI | 4.00E-14 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB55664.1} |
| TAIR | AT1G28690_2 | 2.00E-170 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000191 | 273542 | 277080 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006648
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 20 | 40 | 0.0081 |
| PF01535.19 | PPR | 151 | 165 | 0.66 |
| PF12854.6 | PPR_1 | 225 | 247 | 2.40E-05 |
| PF13041.5 | PPR_2 | 250 | 299 | 2.00E-09 |
| PF01535.19 | PPR | 327 | 352 | 0.52 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.880 |
| SRR2545915 | Juvenile tuber | 1.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.250 |
| SRR5643514 | five period of Gastrodia elata | 3.190 | |
| SRR5643515 | five period of Gastrodia elata | 1.180 | |
| SRR5643524 | five period of Gastrodia elata | 2.180 | |
| SRR5643525 | five period of Gastrodia elata | 0.700 | |
| SRR5643528 | five period of Gastrodia elata | 0.640 | |
| SRR5643658 | five period of Gastrodia elata | 1.400 | |
| SRR5643659 | five period of Gastrodia elata | 2.420 | |
| SRR5643660 | five period of Gastrodia elata | 1.430 | |
| SRR5643661 | five period of Gastrodia elata | 2.250 | |
| SRR5643662 | five period of Gastrodia elata | 2.070 | |
| SRR5643663 | five period of Gastrodia elata | 1.890 | |
| SRR5643664 | five period of Gastrodia elata | 1.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.960 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.860 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.860 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.10 |
| Juven | Juvenile tuber | 1.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.48 | |
| Mother_Juven | Mother tuber of Juvenile | 0.25 |