Gene detail

Detail information of GWHGAAEX006650/evm.TU.scaffold_188.16

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1246	DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain
nr	gi\|743779032\|ref\|XP_010919982.1\|	PREDICTED: lysine-specific demethylase JMJ706-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q336N8\|JM706_ORYSJ	Lysine-specific demethylase JMJ706
trEMBL	tr\|M0SZI4\|M0SZI4_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P18050_001}
TAIR	AT5G46910	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000191	379575	396730	+

Transcript Sequence
>GWHTAAEX006650 ATTAATTACTATGCCGGAAATAATATACTTGGCAAAAGAGAATAGATTATTATCATTATTTCAGCCTTTTTCCCGTTTTCCGAGAGTTCCATCCCATGGCACGATTTTTTTCGGCTCCGTTGGCTTCCGTTCCCTCGTTTTTTTTCTCCATCGGGTATCTCTCATCGTCGCCGTGAACTTCGACGATCGCCGGAGAACCGACGGTCTCTGCTTTGGCCGAGCGATTTTTTATTTGTTGCGACGAAAAGGGCGCGAAATTTGACTTCTGCATCCTCGGTGACTTGCCTTGGGGGAAAAGGCTCGGATCTTGGTGGGATTTGGGCGTGAAAACGTAATGTGGGATCGATTCCTGGAGCAGAATCCGGTTTAGAGATTCCTTGCGTTAGGGATTTTGTTCTGCGGATTTTTTGGTTACTTTGGTGGCGATTTTTCTCTGGTTTCTCTTAATTGATTGGGCTTTGGAGCAGGATTGCTTGGACAGATCTGTGTGAAATGGTGGAGCGGCCATGTTTGACTGGAGAAGTTAAAAGTGGTTTAGAAATATTGAAGCGCCAAAGGCTTGAACGGATGAAGGAGTGTGTAGTTACTGAAACAACTAATGTTACGAGCACAATATCAAGTAGTGGTGATGCTACCCAAGCTCCAGCATGCCTAAATAAAACATATGGCAATGACTCTTCAAAAGTTGTTTTTTCAAAGCCCGTCTTGGGAGACTATGATTTGTCTAACATAGAGTGGATAAGTAAGATTCCAGAATGCCCTGTTTTCTCGCCAACTAAGGAGGAATTTGAAGATCCTTTAATTTATCTTCAGAAGATCGCTCCTTTAGCTTCAAAATATGGCATCTGCAAAATAATTTCTCCTATATATGCTTCTGTATCTGCTGGTGTTGTGTTAATGAAAGAGCAAGGTGGATTCAAGTTTACCACTCGTGTGCAGCCTTTTCGTCTATCTAAGTGGAGTGCTGATGATAAAGTTACCTTCTACATGAGTGGAACGAAGTATTCCTTCCGTGATTTTGAGAAGATGGCAAACAAAGAGTTTGCTCGCAGATATTCCAGTGCTGGATGTCTCCCTGTGAATTATGTTGAAGAACAGTTCTGGCATGAAATTGCTTTTGGCAAGACTGAATTTGTTGAATATGCTTGTGACATTGATGGCAGTGCTTTCTCATCATCTCCTAATGATCAATTGGGAAAAAGCAAATGGAATTTAAAGAGATTTTCTCGTTTGCCAAAGTCCGTGTTGCGACTTTTGCAGTCACCTATTCCTGGAGTAACTGATCCTATGCTTTACATTGGGATGCTTTTTAGTATGTTTGCTTGGCATGTTGAAGACCACTTCTTATATAGCATCAACTATCATCATTGTGGAGCAGCAAAGACTTGGTATGGGATTCCTGGTTATGCAGCACATTATTTTGAAATGGTGGCTCAAGAAAATGTCTATAAACGTGAAATTTTTTCATCAAAAGGAGATGATGCAGCATTTGACATACTTTTGGGAAAGACTACCATGTTTCCACCAAGTATTTTATTAAATCACGATGTTCCTGTTTATAAAGCAGTACAAAAGCCTGGAGAGTTTGTAATTACCTTTCCTCGAGCTTATCATGCTGGATTCAGTCATGGCTTTAATTGCTGCGAAGCTGTCAATTTTGCTACTGGTGATTGGTTTTCCTTGGGTACTGTTGCTAGCCAACGGTATGCCCTTCTTAGCAGGATGCCCTTATTACCCTATGAGGAACTGCTGTGCAAGGAATCCATGCTTCTTTTTAAGAGTCTCAAGGAGTTGGATACAAACAGTCCTGACTCTGGAAATAATGAACTGCTTTCCCAGTTCAATGTTAAGGTTTCATTTGCGAGCTTGATGAGATTTAAACATCAAACCCATTGGTGGTTAATGAAATCGGGAGCTAAGGCATCTTATTTTTTTAACATTTCTGCTGTAATACTTTGCAGTATCTGCAAACGAGACTGTTATGTATCTTATATTAAGTGTAATTGCAATCCTGGTCCAATCTGCCTTCATCATGAGAATTGTATGAGAAATTGTTTTTGTGGCTCCAGCCGTACCATTTTTGTAAGGGAAGATATTTTGGAGATGGAAGTTGCAGCAAAGAAGTTTGAGCAAGAAGATGAGATAACAGTCGTGGTGGAAAAGCAATTACAGGAAACCTGTTGCTTTCCTATTCGTTCAAATGCCTTGCTCTGCACAGATGAGGCTGGTTATTTTCCGTACTGTCAAATAAGATTTTCAGAAGGTATCAAACATGATGCTAGACAAGAATGTAAACCTTGTTCAAGATCAACTTTTTCTTCCCCAAAAGAATGTCTTGCACTGAATCATGGATGCCGACCTTTCGGAGGTGTAAAATCTTTTGAGAAATCTTTTCAAGGTGCGTGGACTTCTGCATATAGCTCTGCTGAGTCTGCTGCATCTGAAATTTCTATGGAGGGATATGAAGCTAGTTCGGAAAATCTAGTATGTCATGATGATGATGATTCGGACTCTGAACTATTCAGGGTAAAGCGCAGGTGTGCTGTGAGCACTGAGAAAAGAACCATAGCATACTCCAAGATTCCTGATAAATTGGCATTCAGACATTTGGAGAAGCCCAGTTTGGAGACATCATCAAAAGACCAAAGAGCTGGTAGAAGCTGCTATGTTGCAGATGGAGTAGGTCTGGCAAGGATGAAGAAGCTTCATCCCTCCAGGTCAATTGGGAAGCATAAAGAGCATAGCAGCCGGAAGGACAGGCTCACCACACAGCCCTTCTCAAATAGCCTACCGCCCAAAGTCAGTACCCGTTCTTTATCTGGCAACCTTATTAACCACAGCAGCTTCCTACCTTCGTTTTCGCCGGAGAGCAAAGAGAAAGCCACCGGCATTTCTTCCAGGCCATAAACTGTGGCTGCTAACTTACTCTTCCCCACCAACGCATGCATTTTGATCTCGGCTCTAATTTAGATCAGATCTGATTCACAAATTTGATTCTTTGTGCGGGCCTCGAATTGATGCGCCGGCACAGCCTGATTCGTAGATTATACAAAAACTGTTGGCATCCGCTCCCTCTGTTTGATTTTGAATCTACTACTGGCAAGCCTTACAAGCTGCTATATCATTTATTGGTGATGACGATCAATTGCTGTATAGGGGGGGTATATAATATAGTATTAGGTCATCACCCTTGCCTCGAATGTCTTTCAGTTAACAACTCCCCTAATTCCTTACATTCTTTTATTGGGTTTAAAGGGCTTCATCTTATAGCATGCGTACAAGCGCTCTTCATCTTTTTAGTATACTTCAATTCATTAATTTTTGTTTGCTTTCTGTCGCTGATTATAATAATTGGAGGCAGTGTTCTCCTTTTTCTGTTTTCTTAATAGAAGAGGAATCTCTTCTTTTGTTAGAGAAAGTTAAAAGTGCAACAAGGGCAAAAGTAGCCTCTTCTGAATCAATGAATAGCCAAAAAGAGAATTTATATCCACTATTGTCGATCTCTCACTGCATAGGCAGCCATATCAGTGTCTGAGCTAAATGTTGGTTTCTGGAGTATCTGAGGTCATCAATGCTT

Network for GWHGAAEX006650

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02375.16	JmjN	90	122	5.40E-15
PF02373.21	JmjC	266	389	4.00E-37
PF02928.15	zf-C5HC2	489	539	7.70E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.580
SRP064423	SRR2545915	Juvenile tuber	7.500
SRP108465	SRR5643513	five period of Gastrodia elata	5.530
	SRR5643514	five period of Gastrodia elata	7.930
	SRR5643515	five period of Gastrodia elata	11.290
	SRR5643524	five period of Gastrodia elata	6.850
	SRR5643525	five period of Gastrodia elata	7.060
	SRR5643528	five period of Gastrodia elata	13.120
	SRR5643658	five period of Gastrodia elata	7.710
	SRR5643659	five period of Gastrodia elata	2.070
	SRR5643660	five period of Gastrodia elata	3.360
	SRR5643661	five period of Gastrodia elata	5.140
	SRR5643662	five period of Gastrodia elata	1.500
	SRR5643663	five period of Gastrodia elata	1.580
	SRR5643664	five period of Gastrodia elata	1.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.320
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.280
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.720
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.920
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.320
SRP279888	Gastro	Gastrodia elata tuber	2.19
	Juven	Juvenile tuber	1.21
	Mother_Gastro	Mother tuber of Gastrodia elata	12.78
	Mother_Juven	Mother tuber of Juvenile	28.57