Gene detail

Detail information of GWHGAAEX006651/evm.TU.scaffold_188.18

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743779036\|ref\|XP_010919984.1\|	1.28E-95	PREDICTED: probable transcription factor KAN2 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9C616\|KAN2_ARATH	2.00E-53	Probable transcription factor KAN2
trEMBL	tr\|M0RXI6\|M0RXI6_MUSAM	2.00E-83	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P06280_001}
TAIR	AT1G32240	8.00E-53	Homeodomain-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000191	450525	454337	+

Transcript Sequence
>GWHTAAEX006651 ATTTTTTTTTAACCTTTTCCTTCGTAAGGATCAAAACCATACAGCCTTTACTCCCTTTAGGGTGAAAAGGAATCAAATCCTCAAAACTCATTCATTTATTTCCACCCCACCTCTCTCCCTCTCTCTCACAACGTCATTTTCTATCATATACTTCCCACAAGGACGCAAGAAACCAAATAATTTCACATCATCTTCTCAAGGGCGGATTATAACCTTCCACTCTCCAACCTGCCTCTTCATAGCTCAATCACCTCCAATTCCAACCTGCCTTCTTTCTTCCAAAAAGTCTCCTTCATTCCTCCCCCAACTCCCTTCTTCTCCACACATCATTCTCCCCAACCCAAAAGCACCACAACAGCCAACACTAAAAAACCCATGATCTGAAACCTCAGAGCAAACAGGACAGCCTAACACAAAAAAAAAGGAAAAAAAAATGGAGCTTTTTCCGGCACAACCAGACCTTTCTCTCCAGATAAGCCCTCCCAACAGCCGCACAGCAGAAGAATCCCTCAGCCTTGGGTTTTGGAGAAGACCGGAGAAGCACGAGGTCTCTGTTCCAAAGCCCTCTTCTACAATCAACGCTTCTTCAGGCATCGGCTTCGATCTCTCACTCTCAAACCGCTCATCTCAGTTCCACCCTCCTTTCCACCACGAATCATCCCCCTTCCAAGACCTAGCCTTTCTCCGGCCCATCAGAGGAATCCCTGTCTACCATTCCTCTGCTTCCTTCCCCTTTCCTCCTCCCCTCCATCTCCACTCTTCTTCCTCTCCTTCTCCCCCTTCCAGATTCCTCCCCAGATTTCCCGCCAAGCGAAGCATGCGCGCTCCAAGGATGCGCTGGACTTCCACTCTCCACGCCCGCTTCGTCCACGCCGTAGAGCTCCTCGGCGGTCATGAGAGAGCGACCCCAAAATCGGTTCTTGAGCTCATGGATGTCAAAGATCTCACGTTGGCTCATGTCAAATCTCACCTCCAGATGTATCGAACCGTCAAGACCACGGATAAAGCGGCAACTTCCTCAGGCCAAAGCGAGCCCATTGAGATCTCCGACGACAACTTGTTTGATATGCAGAATTCGCAGGGATCTGATCACTCTCCTGTTCGGAGTTTAAGGTCCGCAGATCAAAACTGCACGAATTCTTATGCATTATGGAGTAATTCTTCTAGGGGAGGCTGCAATTATCATGAAAAGCCGAAGGAATCATCAGCCGTGGGGAGCCTGTCTTGCTTCGAGAGCAAGACAAGATCGAGGAGCTCGAATATGATATCAGATCTCAACTCTCAATTCTCAGAGAACAATAATAGCTCGAAAAAGCTGAATCTTGATTTCACTTTAGGAAGGCCACAGTGAATTGAAGATATAATGATGTGATAAAAAGAAGGCGCAGCGCTTATTTTTTCTCTTTTGCATCAGAAAGCAAAGAGATTATTAAAGAAAGGGAGGATATAAGCGAAAAAAAGAGTCTTAAAAGAAAGAGAGAGAGAGAGATTAATGAGCCTTGAGGCTGTGCTTTACGACTTTCGGAAGAGAGAGAGAGAGACAGAGATAGAGAGGGCTTTGCCTTCTTAAGATTCGTGAAGAGGAAAGGAGCTATTGATCGAACGGTGGCTTTCTTACTTGCACGTGCTTTGCTTTGTTGCTTCCCAACAAAGCGTAAAGGCAAATTCAGAACTGAGCCTTAGAGGTAGGAAATTGTAGTCTAATGTATTTGGTGTAATTTTATTATAATTTCCAAGCAATATTTACAGTGAAGCTACTATTGCAATGCCACGTTACAATCTCGAATTTTCTAAATGTTCGAATTATTATACATAAAGATTTTATTCTTAAACTGTTTCAACTGATCTTAATCTAATGAGCTATTTGAAATTTGTTGCGAAGAAAACCTGATGCCTT

Network for GWHGAAEX006651

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	133	184	4.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.470
SRP064423	SRR2545915	Juvenile tuber	17.410
SRP108465	SRR5643513	five period of Gastrodia elata	10.660
	SRR5643514	five period of Gastrodia elata	8.890
	SRR5643515	five period of Gastrodia elata	7.450
	SRR5643524	five period of Gastrodia elata	9.620
	SRR5643525	five period of Gastrodia elata	8.590
	SRR5643528	five period of Gastrodia elata	2.450
	SRR5643658	five period of Gastrodia elata	3.300
	SRR5643659	five period of Gastrodia elata	4.240
	SRR5643660	five period of Gastrodia elata	2.760
	SRR5643661	five period of Gastrodia elata	5.120
	SRR5643662	five period of Gastrodia elata	3.380
	SRR5643663	five period of Gastrodia elata	5.300
	SRR5643664	five period of Gastrodia elata	3.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.630
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.730
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.220
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.820
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.880
SRP279888	Gastro	Gastrodia elata tuber	4.83
	Juven	Juvenile tuber	6.36
	Mother_Gastro	Mother tuber of Gastrodia elata	14.46
	Mother_Juven	Mother tuber of Juvenile	10.16