Detail information of GWHGAAEX006653/evm.TU.scaffold_188.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|186681916|ref|YP_001865112.1| | 5.00E-15 | cellulose synthase [Nostoc punctiforme PCC 73102] |
| nr | gi|593110108|ref|XP_007131523.1| | 0 | hypothetical protein PHAVU_011G020100g [Phaseolus vulgaris] |
| Swissprot | tr|Q9M9M4|CSLD3_ARATH | 0 | Cellulose synthase-like protein D3 |
| trEMBL | tr|V7AF90|V7AF90_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW03518.1} |
| TAIR | AT3G03050 | 0 | cellulose synthase-like D3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000191 | 749709 | 755317 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006653
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14570.5 | zf-RING_4 | 115 | 164 | 4.40E-15 |
| PF03552.13 | Cellulose_synt | 358 | 717 | 5.10E-174 |
| PF03552.13 | Cellulose_synt | 728 | 1101 | 1.50E-192 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030244 | Biological Process | cellulose biosynthetic process |
| GO:0016760 | Molecular Function | cellulose synthase (UDP-forming) activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.360 |
| SRR2545915 | Juvenile tuber | 17.580 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.780 |
| SRR5643514 | five period of Gastrodia elata | 20.620 | |
| SRR5643515 | five period of Gastrodia elata | 115.060 | |
| SRR5643524 | five period of Gastrodia elata | 20.070 | |
| SRR5643525 | five period of Gastrodia elata | 136.770 | |
| SRR5643528 | five period of Gastrodia elata | 96.780 | |
| SRR5643658 | five period of Gastrodia elata | 94.590 | |
| SRR5643659 | five period of Gastrodia elata | 113.450 | |
| SRR5643660 | five period of Gastrodia elata | 36.290 | |
| SRR5643661 | five period of Gastrodia elata | 66.390 | |
| SRR5643662 | five period of Gastrodia elata | 95.570 | |
| SRR5643663 | five period of Gastrodia elata | 86.090 | |
| SRR5643664 | five period of Gastrodia elata | 420.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 157.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 43.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 104.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 115.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 79.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 91.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 229.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 104.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 59.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 212.330 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 59.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 59.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 50.10 |
| Juven | Juvenile tuber | 3.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 413.64 | |
| Mother_Juven | Mother tuber of Juvenile | 154.10 |