Detail information of GWHGAAEX006654/evm.TU.scaffold_188.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|379733788|ref|YP_005327293.1|1.00E-130long-chain-fatty-acid--CoA ligase [Blastococcus saxobsidens DD2]
KOGKOG11760Acyl-CoA synthetase
nrgi|695075017|ref|XP_009384734.1|0PREDICTED: probable 4-coumarate--CoA ligase 2 [Musa acuminata subsp. malaccensis]
Swissprottr|Q42982|4CL2_ORYSJ0Probable 4-coumarate--CoA ligase 2
trEMBLtr|Q9M7S3|Q9M7S3_LOLPR04-coumarate--CoA ligase 4CL1 {ECO:0000313|EMBL:AAF37732.1}
TAIRAT1G6506004-coumarate:CoA ligase 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000191788241796493-
Transcript Sequence

Network for GWHGAAEX006654

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.27AMP-binding494601.50E-105
PF13193.5AMP-binding_C4695442.50E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K019044CL Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Phenylpropanoid biosynthesismap00940

Gene Ontology

GO term OntologyName
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.800
SRR2545915Juvenile tuber0.470
SRP108465SRR5643513five period of Gastrodia elata6.110
SRR5643514five period of Gastrodia elata14.830
SRR5643515five period of Gastrodia elata7.950
SRR5643524five period of Gastrodia elata13.370
SRR5643525five period of Gastrodia elata0.510
SRR5643528five period of Gastrodia elata0.290
SRR5643658five period of Gastrodia elata0.110
SRR5643659five period of Gastrodia elata0.490
SRR5643660five period of Gastrodia elata0.250
SRR5643661five period of Gastrodia elata0.840
SRR5643662five period of Gastrodia elata0.350
SRR5643663five period of Gastrodia elata0.120
SRR5643664five period of Gastrodia elata0.290
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.080
SRR6049655Rhizomagastrodiae_C368-T10_good_121.150
SRR6049656Rhizomagastrodiae_C368-T07_good_124.830
SRR6049657Rhizomagastrodiae_C368-T07_good_130.920
SRR6049658Rhizomagastrodiae_C368-T04_good_116.980
SRR6049659Rhizomagastrodiae_C368-T04_good_115.910
SRR6049660Rhizomagastrodiae_C368-T01_good_135.630
SRR6049661Rhizomagastrodiae_C368-T04_good_118.770
SRR6049662Rhizomagastrodiae_C368-T01_good_130.990
SRR6049663Rhizomagastrodiae_C368-T01_good_123.640
SRR6049664Rhizomagastrodiae_C368-T10_good_116.340
SRR6049665Rhizomagastrodiae_C368-T10_good_116.340
SRP279888GastroGastrodia elata tuber 0.77
JuvenJuvenile tuber43.94
Mother_GastroMother tuber of Gastrodia elata 1.66
Mother_JuvenMother tuber of Juvenile 7.23