Gene detail

Detail information of GWHGAAEX006657/evm.TU.scaffold_188.38

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383453054\|ref\|YP_005367043.1\|	2.00E-113	efflux ABC transporter permease/ATP-binding protein [Corallococcus coralloides DSM 2259]
KOG	KOG0055	0	Multidrug/pheromone exporter, ABC superfamily
nr	gi\|743835017\|ref\|XP_010935700.1\|	0	PREDICTED: ABC transporter B family member 1-like [Elaeis guineensis]
Swissprot	tr\|Q9ZR72\|AB1B_ARATH	0	ABC transporter B family member 1
trEMBL	tr\|A0A097P9Q2\|A0A097P9Q2_HEVBR	0	ABC transporter family protein {ECO:0000313\|EMBL:AIU41628.1}
TAIR	AT2G36910	0	ATP binding cassette subfamily B1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000191	985662	990452	+

Transcript Sequence
>GWHTAAEX006657 ATGTCGCCGGAGCATCTGAGCCGCCCCGAAATGCAAGGTTTCCACCTCTGCTCGCCTCAGAATTCTCCCAGCCATGAGGATTCGCTGCCCAAAGGGAAGACAGAAGAGGAGGGCTGCGCTGCAGGGGAAAGAAGGGAGCACCAGAAGCCCGCAGCTCCATTGCCAGCAGTCAATTGCTCCGAGCTCTTCCGATTTGCCGACGGGCTAGACTGCCTGCTGATGGCTATCGGAACCGCCGGCGCCATCATCCATGGCAGCTCCCTGCCGGTGTTCCTCCGATTCTTTGCGGATCTCGTGGATTCCTTCGGTTCCAATGCCAACGACCCTGATGCGATGGTCCGGGAAGTTGTCAAGTATTCCTTCTACTTCCTGGTGGTCGGCGCCTCCATCTGGGCTTCGTCTTGGGCCGAGATCTCCTGCTGGATGTGGACGGGGGAGCGGCAGTCTACCAGGATGAGGATAAAGTTTCTGGAATCCGCACTGAATCAAGATATTCGGTACTTCGACACTGAGGTTCGGACGGCGGACATCGTCTTCGCCATCAACGCCGACTCCGTCGTTATACAGGACGCCATCAGCGAGAAGCTGGGCAACTTGATTCACTACACGGCAACTCTTGTCTCCGGCTTCATCGTCGGTTTCATGGCCGTTTGGCAGCTGGCACTCGTCACTCTCGCGGCGGTTCCGCTGATAGCAGTCATCGGAGGCATCCACACGACGACTTTGGCGACGCTCTCCTCGCGGAGTCAGGACGCGCTTTCACAGGCGAGCGGCATAGCAGAGATGTCTCTGTCGCAGATACGCATGGTGCAGTCATACTGCGGGGAGTCGAGGGCGGTCCGAGCCTACTCGGCAGCGCTGAAGGTGGCCCAGAGGATCGGCTACCGAAGTGGCATCGCAAAGGGCGTCGGCCTTGGCGCAACCTACTTCACTGTCTTCTGCTGCTATGCGCTCCTCCTCTGGTATGGCGGCCACCTCGTTCGCCATCGTCATGCCAATGGCGGCTTAGCTGTTACCACCATGTTTGCAGTCATGATCGGGGGACTAGCTCTTGGGCAGTCAGTTCCAAGCCTATCTGCCCTCGCCAAGGCAAAAGTTGCGGCAGCCAAAATATTTAAGACAATTGACCACAGGCCGGAGATCGATCGTAGTGCCGAAACTGGGATGATGCTGGAAACGGTCTCCGGCAAAATTGAGCTCAAAAATGTATTCTTTGCTTATCCGGCTAGACCTGAGGTGCAAATCCTGAACAATCTTTCTCTGAGCGTTGCGGCTGGAAAAACGCTGGCGCTTGTGGGGAGCAGCGGCTCCGGCAAGAGCACTGTAGTCTCCCTTATAGAGCGATTCTATGACCCTAATTCAGGAAAAGTGCTGCTGGACGGGAACGATATAAAAGAGATGAATCTGAGATGGCTAAGGCATCAGATTGGGCTGGTGAGCCAGGAGCCAGCACTGTTTGGCACCACCATCCGAAAGAATTTCCTATTGGGAAGGGAAGATGCTTCGCAGGCGGAGATAGAAGAAGCTGCAAGGGTCGCCAATGCCCATTCTTTCATCGTAAAGCTGCCGGAAGGCTACGACTCCCAGGTTGGGGAAAGGGGATTGCAGCTATCAGGTGGGCAGAAGCAGAGGATTGCGATTGCACGGGCAATGCTGAAGAATCCGACTGTACTGCTGCTCGATGAGGCTACCAGCGCCCTTGACTCGGAATCTGAGAAGCTAGTGCAGGAGGCATTGGACCGTTTCATGATCGGCCGCACCACACTCGTAATCGCACACCGGCTTTCCACCATCCGCAAAGCTGATGTCGTCGCGGTTATCCAGCAGGGAAGTGTTGCTGAGCTTGGCACACACGAGGAACTTACGGCGCGGCCAGAAAGCGGCATCTACGCTCGCCTCATCCGCCTTCAGGAGCAAGCCCATGACGCCGCTCTCATCAATGCCAGGAAGAGCAGCGCGCGGCCTTCGAGCGCTCGAAACTCTGTAAGCTCGCCGATCATAGCGCGCAACTCATCGTATGGCCGATCCCCTTACTCGCGCCGCCTCTCCGACTTCTCCATCTCCGATTACGGCCTATCCGTTGACAATTGTAACTACAAATCTGTAGAAAGACTGGCGTTGCGCGACCAAGCCAGCTCCTTCTGGAGGTTAGCCAAGATGAACTCGCCGGAGTGGGTTTATGCGCTGATTGGCTCTATTGGCTCCATGCTGTGCGGCTCCATGAGCGCCTTCTTCGCCTATGTCCTCAGCACTGTGCTGAGCGTGTACTACGCAGAGGACTATGATTACATGAGGCGCGAGATTGCCAAGTACTGCTACCTCCTCATTGCTGTCTCCTCCGCCGCTCTGCTTTTCAACACACTTCAGCATTTCTTCTGGGACGTGGTGGGAGAGAACCTGACTAAGAGAGTTCGGGAAAGGATGTTAGCCTCTTTTCTACGGAATGAAATCGCCTGGTTCGACAGTGATGAAAACTCGAGCTCCAAGACAGCAGCCAGATTAGCATTGGACGCCCACAACGTCAGGTCCGCCATTGGCGATCGAATATCAGTGATTGTCCAAAACATTGCGCTCCTGCTCGTCGCCTGTACGGCGGGGTTCATACTCCAGTGGCGTCTCGCTGTTGTTCTCATAGCCGTGTTTCCTGTCGTTGTCGCCGCCACCGTTCTGCAGAAAATGTTTCTCAAAGGCTTCTCCGGAGACCTGGAAATGGCGCATGTAAGCGCCACGCAGATTGCCGGGGAGGCGGCAGCGAATGTTCGGACTGTTGCGGCATTCAACTCGGAGGCCAAGATCGTTGAGCTCTTCGCAGCGAATTTGGGGGGACCTCTGCGGCGGTGTTTCTGGAAAGGCCAGATCGCCGGGAGCGGATACGGGGTCGCCCAGTTCCTCCTCTACGCATCATACGCTCTTGGGCTGTGGTACGCCGCTTGGCTGGTGAAGCATGGAATCTCGGACTTCTCCAAGACCATTCGGGTCTTCATGGTGCTGATGGTGTCTGCAAACGGTGCTGCAGAGACGCTGACCCTCGCCCCGGATTTCATCAAGGGGGGGCGCGCCATGCGTTCCGTGTTTGAAATCCTGGATCGGAAGACGGAAATCGAGCCCGACGACCAGGAGGCGCTCCAGGTGCCGGAGCGCCTCCGTGGAGAAGTGGAGCTCAAGCACGTGGATTTCGCATACCCATCGCGGCCTGATTTCGCCGTCCTCCGCGACCTCAGCCTGCGAGCCCGCGCAGGCAAGAGTCTAGCGCTGGTTGGGCCAAGCGGGTGCGGGAAGAGCTCCGTCATCGCCCTCGTCCTGCGATTCTACGATCCGAGCTCCGGGAGGGTTCTTGTGGATGGGAGGGACATCCGCAAGTACAATCTCAGATCGCTGAGGCAGGCGATGGCGGTGGTGCCGCAAGAGCTGTGCCTGTTCGCAGCAACAATCGAAGAGAACATTGCCTACGGAAAGGAGGGAGCGACTGAGGCGGAGATCGTCGAGGCCGCAACAGCGGCCAACGCCCACGTATTTATTTCCGCAATGCCGGAGGGGTACCGGACATGGGTGGGGGACCGCGGGGTTCAGCTTTCGGGGGGACAGCGCCAGCGGATCGCGATTGCGCGCGCGCTGCTCAAAAAGGCGCCCGTGCTGCTGCTTGACGAGGCCACCAGCGCACTTGACGCCGAATCCGAACGGTCCGTGCAGGTGGCGTTCGACCGGGCCGCGGCCGGTCGAACCACCATCGTGGTCGCCCACCGGCTCGGTTTGGTGAGAGGGGCCCACACCATCGCGGTGATTGAGGAGGGGATGGTCGTGGAGCAGGGATCGCATTCGCATCTTGTGGCGCACTATCCGGATGGGTGCTACGCACGGATGCTGCAGCTGCAGCGCTTGTCGCACGGGCTGGTGGTGGGTGCCAATGCTTCGGGTGCGTCTACGAGCGTCAAGGAGGATAAGGACAAACTGTAG

Network for GWHGAAEX006657

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	75	348	1.40E-54
PF00005.26	ABC_tran	416	565	4.00E-36
PF00664.22	ABC_membrane	730	999	1.30E-47
PF00005.26	ABC_tran	1070	1219	2.00E-31

Protein Sequence

>GWHPAAEX006657
MSPEHLSRPEMQGFHLCSPQNSPSHEDSLPKGKTEEEGCAAGERREHQKPAAPLPAVNCSELFRFADGLDCLLMAIGTAGAIIHGSSLPVFLRFFADLVDSFGSNANDPDAMVREVVKYSFYFLVVGASIWASSWAEISCWMWTGERQSTRMRIKFLESALNQDIRYFDTEVRTADIVFAINADSVVIQDAISEKLGNLIHYTATLVSGFIVGFMAVWQLALVTLAAVPLIAVIGGIHTTTLATLSSRSQDALSQASGIAEMSLSQIRMVQSYCGESRAVRAYSAALKVAQRIGYRSGIAKGVGLGATYFTVFCCYALLLWYGGHLVRHRHANGGLAVTTMFAVMIGGLALGQSVPSLSALAKAKVAAAKIFKTIDHRPEIDRSAETGMMLETVSGKIELKNVFFAYPARPEVQILNNLSLSVAAGKTLALVGSSGSGKSTVVSLIERFYDPNSGKVLLDGNDIKEMNLRWLRHQIGLVSQEPALFGTTIRKNFLLGREDASQAEIEEAARVANAHSFIVKLPEGYDSQVGERGLQLSGGQKQRIAIARAMLKNPTVLLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADVVAVIQQGSVAELGTHEELTARPESGIYARLIRLQEQAHDAALINARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSISDYGLSVDNCNYKSVERLALRDQASSFWRLAKMNSPEWVYALIGSIGSMLCGSMSAFFAYVLSTVLSVYYAEDYDYMRREIAKYCYLLIAVSSAALLFNTLQHFFWDVVGENLTKRVRERMLASFLRNEIAWFDSDENSSSKTAARLALDAHNVRSAIGDRISVIVQNIALLLVACTAGFILQWRLAVVLIAVFPVVVAATVLQKMFLKGFSGDLEMAHVSATQIAGEAAANVRTVAAFNSEAKIVELFAANLGGPLRRCFWKGQIAGSGYGVAQFLLYASYALGLWYAAWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFEILDRKTEIEPDDQEALQVPERLRGEVELKHVDFAYPSRPDFAVLRDLSLRARAGKSLALVGPSGCGKSSVIALVLRFYDPSSGRVLVDGRDIRKYNLRSLRQAMAVVPQELCLFAATIEENIAYGKEGATEAEIVEAATAANAHVFISAMPEGYRTWVGDRGVQLSGGQRQRIAIARALLKKAPVLLLDEATSALDAESERSVQVAFDRAAAGRTTIVVAHRLGLVRGAHTIAVIEEGMVVEQGSHSHLVAHYPDGCYARMLQLQRLSHGLVVGANASGASTSVKEDKDKL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.110
SRP064423	SRR2545915	Juvenile tuber	8.310
SRP108465	SRR5643513	five period of Gastrodia elata	80.210
	SRR5643514	five period of Gastrodia elata	77.700
	SRR5643515	five period of Gastrodia elata	55.760
	SRR5643524	five period of Gastrodia elata	61.450
	SRR5643525	five period of Gastrodia elata	103.900
	SRR5643528	five period of Gastrodia elata	70.750
	SRR5643658	five period of Gastrodia elata	58.070
	SRR5643659	five period of Gastrodia elata	18.100
	SRR5643660	five period of Gastrodia elata	12.400
	SRR5643661	five period of Gastrodia elata	16.130
	SRR5643662	five period of Gastrodia elata	17.090
	SRR5643663	five period of Gastrodia elata	15.260
	SRR5643664	five period of Gastrodia elata	14.260
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	111.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	93.070
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	114.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	110.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	91.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	90.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	128.490
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	89.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	105.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	98.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	96.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	96.440
SRP279888	Gastro	Gastrodia elata tuber	25.94
	Juven	Juvenile tuber	210.46
	Mother_Gastro	Mother tuber of Gastrodia elata	51.25
	Mother_Juven	Mother tuber of Juvenile	71.70