Detail information of GWHGAAEX006658/CADD00534.1.gene
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|672160663|ref|XP_008800116.1| | 1.48E-92 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like [Phoenix dactylifera] |
| Swissprot | tr|Q9C6P5|RAVL2_ARATH | 5.00E-81 | AP2/ERF and B3 domain-containing transcription factor At1g50680 |
| trEMBL | tr|V4WJE7|V4WJE7_9ROSI | 2.00E-87 | Uncharacterized protein {ECO:0000313|EMBL:ESR66904.1} (Fragment) |
| TAIR | AT1G50680 | 2.00E-80 | AP2/B3 transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000191 | 993084 | 994590 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006658
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 109 | 155 | 0.00024 |
| PF02362.20 | B3 | 226 | 319 | 1.30E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-RAV |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.110 |
| SRR2545915 | Juvenile tuber | 0.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.110 |
| SRR5643514 | five period of Gastrodia elata | 0.040 | |
| SRR5643515 | five period of Gastrodia elata | 0.050 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.330 | |
| SRR5643528 | five period of Gastrodia elata | 0.170 | |
| SRR5643658 | five period of Gastrodia elata | 0.170 | |
| SRR5643659 | five period of Gastrodia elata | 0.090 | |
| SRR5643660 | five period of Gastrodia elata | 0.050 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.100 | |
| SRR5643663 | five period of Gastrodia elata | 0.080 | |
| SRR5643664 | five period of Gastrodia elata | 0.240 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.160 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.150 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.05 |
| Juven | Juvenile tuber | 0.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.50 | |
| Mother_Juven | Mother tuber of Juvenile | 0.42 |