Detail information of GWHGAAEX006659/evm.TU.scaffold_188.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332797172|ref|YP_004458672.1| | 2.00E-15 | GHMP kinase [Acidianus hospitalis W1] |
| KOG | KOG4519 | 0 | Phosphomevalonate kinase |
| nr | gi|672109111|ref|XP_008788523.1| | 0 | PREDICTED: probable phosphomevalonate kinase [Phoenix dactylifera] |
| trEMBL | tr|M0TQG7|M0TQG7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P14640_001} |
| TAIR | AT1G31910 | 0 | GHMP kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000191 | 1043806 | 1081105 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006659
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00288.25 | GHMP_kinases_N | 199 | 277 | 2.60E-15 |
| PF08544.12 | GHMP_kinases_C | 425 | 493 | 1.70E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00938 | E2.7.4.2, mvaK2 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of antibiotics | map01130 | ||
| Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004631 | Molecular Function | phosphomevalonate kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 57.090 |
| SRR2545915 | Juvenile tuber | 53.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.670 |
| SRR5643514 | five period of Gastrodia elata | 16.280 | |
| SRR5643515 | five period of Gastrodia elata | 18.680 | |
| SRR5643524 | five period of Gastrodia elata | 19.840 | |
| SRR5643525 | five period of Gastrodia elata | 17.760 | |
| SRR5643528 | five period of Gastrodia elata | 17.850 | |
| SRR5643658 | five period of Gastrodia elata | 17.410 | |
| SRR5643659 | five period of Gastrodia elata | 25.630 | |
| SRR5643660 | five period of Gastrodia elata | 25.400 | |
| SRR5643661 | five period of Gastrodia elata | 23.030 | |
| SRR5643662 | five period of Gastrodia elata | 22.300 | |
| SRR5643663 | five period of Gastrodia elata | 26.530 | |
| SRR5643664 | five period of Gastrodia elata | 24.970 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 26.820 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.790 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 24.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 27.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.950 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.41 |
| Juven | Juvenile tuber | 27.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.68 | |
| Mother_Juven | Mother tuber of Juvenile | 21.35 |