Gene detail

Detail information of GWHGAAEX006660/evm.TU.scaffold_188.42

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|433609836\|ref\|YP_007042205.1\|	1.00E-90	putative 4-coumarate-CoA ligase 3 [Saccharothrix espanaensis DSM 44229]
KOG	KOG1176	0	Acyl-CoA synthetase
nr	gi\|672109611\|ref\|XP_008791017.1\|	0	PREDICTED: 4-coumarate--CoA ligase-like 6 [Phoenix dactylifera]
Swissprot	tr\|Q84P24\|4CLL6_ARATH	0	4-coumarate--CoA ligase-like 6
trEMBL	tr\|A0A061G6U1\|A0A061G6U1_THECC	0	Acyl:coa ligase {ECO:0000313\|EMBL:EOY25276.1}
TAIR	AT4G19010	0	AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000191	1096125	1115179	-

Transcript Sequence
>GWHTAAEX006660 TCCCCCTCTCTCTCTCTCTCTGTGCTAATTTCCACATAAAGCCATTCACTGTACTCTCCTTCACCCCCATGGAAGGAGATCTCTCTAGCCGCCTAAGCTTCCCAGTCTCCCATCCAAGCTGGTTCTCCCCAGAAACCGGAATCTACAGCAGCGTTCACGCCCGTAGACCTCTCCCTCAAGATGCATATCAAGACCTGGTATCATTTCTATTCTCCAGACCTCACAGAGGCGAAACAGCCCTCATTGATTCCGCATCAGGGCTCTCCATCTCATACCAAGACCTTCATTCCATGGTTGATCGTATTGTCTCCGGTCTTCAAGACATTGGAGTTTCCCCCGGCCAAGCCGTCCTCATTCTCCTCCCAAACTCTATTCTCCTCCCTGTCATCCTCCTCGGGGTCCTCTCTCTTGGCGCCGTCATCACAACAATGAATCCCCTCTGTCGGCCTATAGAAATCAAGAAGCAGATGAGCAGCATCCCTCTGGCCGTGGTTTTCTCTTCCACGGAAAAAATCTCCTCACTGGGCCGATTCGATGTTCCGGTTGTCGCCGTTCCGGATGACCTGGGCTACGATTCCGCTCATTACTCTATTTTTCATAAAATTGTTTCCGGAAGTTCACGGATCGTTTGGAGACCGGCGATCCGGCAGAGCGACACCGCAGCGATTCTATTCTCTTCGGGAACGTCTGGATCCAGCAAGGGTGTCGTTTTGACTCACAGTAATTTGATCGCCATGGTCGAGCTCTTTGTCGGATTCGAGGCTTCGCAGTATAAAAAGGAGAGTTGGAAGGATGTGTACCTCGCCGCCATACCTATGTTTCATGTTTACGGCCTTTCTCTGTTTTCCATTGGGCTGCTTTCTCTGGGCTCGACGATTGTGGTGATGAGGAGGTTTGAAGCGCAGGAGGCCGCCACAACTATAGCAAAATATGGAGTAACTCATTTTCCGGTTGTTCCGCCGATAATGGCTGCTCTTATAAGGGCCAAGGGTGCCGGCCATGGCTGTAATTTAAGCTCTTTGAAGCAGGCTTCTTCCGGTGCGGCTCCTCTGAGCAAGCAGTTGATACACGAGTTCTTGCGGACATTTCCTCATGTCGATTTTATTCAGGGATATGGTATGACAGAATCTACTGCGGTTGGAACTCGTGGCTTCAATACCGAAACCTGTAAGAAGTTTACATCAGTAGGGCTTCTCGCTCCAAACATGGAAGCCAAAGTAGTGGATTGGGAAACCGGAATATCCATGCCGCCTGGGCAAAGAGGAGAGCTCTGGCTGCGTGGTCCTGCAATCATGAAAGGATACTTGAATGATGATGAGAGAGAAGGCGTTGATAAGGATGGATGGTTCAAGACGGGAGACATTGTGTACTTCGATCAGGAGGGATCTTTGTTCATTTCGGATCGATTGAAGGACACAATAAAATACAAGGGATTTCAGATAGCCCCCGCCGACCTGGAAGCCTTGCTGATCTCCCACAGCGAAATCCTCGACGCCGCTGTGACGTCAGCATTTCACGAGGAAGCAGGGGAGATACCCGTTGCGTTTGTGGTTCGGAAGTCCGGCAGCAATCTTTCGTCCTCCGAGATTATGGAGTTTGTGGCTAAACAGGTGGCGCCGTACAAGAAAATCAGGAGGGTAACATTCGTGCAATCCATTCCAAAGACTCCGGCCGGGAAGACACTGAGGAGAGTTCTCAAGAGCAGCTTCGGTTCTTCTTCCCGGATGTAGAACAACAATAATAGAATAAAGATCCTCCCTACTCTGTAAGGTCTTTTTTTGTTTTATTTTCGATTTGTAAGTTTTGCGTCTGTCAAATGAATGTCCTTGTGCTGTTCTTGCTGTTGATTATACGCCTTGCAATGTTCGGCAGCTACTCAACAGAAATTGATGCAAAATTAAGTTTGTTTTCTTGCGTCATGTGGCGTTGTGCTCTATCATTTAAGTGGCTTGATTTTGGTAATTTAACTCTATTCATAGATCGTGGACTAAATAGTTCTAGATTAATTATCATATAATCAATTAATTAATTTTATAATAAATTTTATTACGGAGCATTTAGTCTGTTATTAAGTAATTTAGTTATCTTAATTAATAAGTATATCAGCCATGAATGAATTTTCATCATCTTGAAACACTTGTGCTGGATAATTTTGTTAATGCTATTTATTGTTGAGATGAGAAAATTTTCTTGTGGTCATCTTCTTTCATGGGAGAGAGTGAGACATCTTCTGAAAAATTTGCTGCAACTTGAGATTCAATTTTGTTTTTTCTCCGATACTTTTCTCCCACTTCTAGGTGTAACATCCCACAAATATCAGCTTAAAATGTCTTAATTACCGTTATATTGGTATTATTATTAGTATTTCTGAAAACGCATTTTTTTGACTGGTATTGTTAACGAGTTCAATTGTACAGATGCGAGTCCAGACATAACAACATCAAATGTGCGGATGTGAGTCTGCGCACAATTAAAATGAACTTAAATGCAATTTATATTGGGATGCGATTCTTAGCATCTAGATACATTTAGGTGTGGCCTAAAATACTATATAAATAGCTCTTAATATAAGAGAAATTTTATAAATATCCAAAATCCTACATTTATCCTATTGAAGCACCAAGGCACAATAAATTATTATTTTGTTGAGATGCAATTGATGTGCTTATTTTTGTGATTTTATTGAATATAAAGCTTTATCATTTTCTTAACCCAATCATTTATTATTATAAGTTTTATTCGTACAATACTTGTAAATATTATTGTGTTGCTGAGAAAATCTTTCAATT

Network for GWHGAAEX006660

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00501.27	AMP-binding	52	453	7.00E-93
PF13193.5	AMP-binding_C	463	537	3.60E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01904	4CL	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.000
SRP064423	SRR2545915	Juvenile tuber	4.360
SRP108465	SRR5643513	five period of Gastrodia elata	49.870
	SRR5643514	five period of Gastrodia elata	15.030
	SRR5643515	five period of Gastrodia elata	56.810
	SRR5643524	five period of Gastrodia elata	23.800
	SRR5643525	five period of Gastrodia elata	1.430
	SRR5643528	five period of Gastrodia elata	3.550
	SRR5643658	five period of Gastrodia elata	3.890
	SRR5643659	five period of Gastrodia elata	48.300
	SRR5643660	five period of Gastrodia elata	24.150
	SRR5643661	five period of Gastrodia elata	48.800
	SRR5643662	five period of Gastrodia elata	42.720
	SRR5643663	five period of Gastrodia elata	80.620
	SRR5643664	five period of Gastrodia elata	5.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.120
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.590
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.110
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.430
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	62.650
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	20.480
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	20.480
SRP279888	Gastro	Gastrodia elata tuber	22.28
	Juven	Juvenile tuber	0.74
	Mother_Gastro	Mother tuber of Gastrodia elata	5.93
	Mother_Juven	Mother tuber of Juvenile	5.67