Gene detail

Detail information of GWHGAAEX006661/evm.TU.scaffold_188.44

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1134	Uncharacterized conserved protein
nr	gi\|743779150\|ref\|XP_010920040.1\|	PREDICTED: LOW QUALITY PROTEIN: CSC1-like protein At1g32090 [Elaeis guineensis]
Swissprot	tr\|Q9FVQ5\|CSCL1_ARATH	CSC1-like protein At1g32090
trEMBL	tr\|U5D2F6\|U5D2F6_AMBTC	Uncharacterized protein {ECO:0000313\|EMBL:ERN15572.1}
TAIR	AT1G32090	early-responsive to dehydration stress protein (ERD4)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000191	1188438	1256285	-

Transcript Sequence
>GWHTAAEX006661 CCACACTCCGACAAATCTCTGATTATACTGTGTTTTTCCCAGTGAGAACTGAACTTTGGAAGACGAAGTTTGAGCAGGAAAGCAAAAACAATCACCACTCGCATTTATTCCTATCATTTATTTTTCCCTTTGAACTGAATCTCCTGTATTTATTTCTTCCGATTTTCCTTCACTCTCCGTTCACGACTTCGGCCCTTCCATCCTCCCTTGTTGTTCATCACTAGTCATTTTAATTTCTTCTTCCATGTGATTTGTATAATCTAATGGCATCCTTGGAGGACATCGCCGTCTCAGCCTTCATCAACATTTTGAGCGCCATCGGCTTCCTCGTTGCTTTCGCTGTGCTGAGAGCTCAGCCCGTCAACTCGAGAGTTTATTACCCCAAGTTGCACATAAATGGTTCGAGGAGTTCACCTCGAGGATCCACGAATGGGGTCCTCCGCTTTGTCAATTTCAACATCTGGAGCTTCGTCGTTAGCTTCTTGAGCTGGATGCCGGAAGCCCTTCAGATGAGCCAAACAGATATCATTCAGCACGCTGGCCTCGATTCCGCTGTCTATCTCCGGATCTACATTCTTGGCTTAAAGATTTTTGTGCCAATGACAATTTGTGCAATATTGATTTTAGTACCGGTCAATGTATCTAGTGGAACATTGCTCAGTCTCAAGAAAGACATTGTTTTCAGTGATATTGATATACTCTCCATTTCCAATATCAAACCAGAATCTGAGAGGCTTTGGGTACACCTGAGCATGGCGTACATATTCACCTTTTGGACTTCTTATATGCTATACATAGAATATGATAATATAGTTTTTATGCGTCTGCACTTCTTGGCATCACAGCACCGTCGTGTGGAGCAATTCACAGTAGTAGTCAGAAATATTCATCGAATATTAGGGCATTCCATTGCAGAGAGCGTGGATCATTTCTTTCAGAAGAATCATCCTGACCACTATCTTAGTCACCAGGCTGTTTACAATGCAAATGGATTTGCAAAACTTGTCAGACAAAAAGAAAGGCTGCAAAACTGGTTGGACTATTACCAACTCAAATTTGAACGAAATCAAGATAGACGGCCGACTGTTAAGATTGGCTTTCTTGGCCTTTGTGGTCAAAGAGTAGATTCAATTGATTATTATAGGAAAAGGATCATTGCACTTGAGAAAAGAATAGCATCAGAACATCAAAAAATTCTTAAAGACCCCAAGGCTATTCTACCAGTTGCTTTTGTCACATTCGACTCTAGATGGGGTGCAGCAGTTTGTGCACAGACACAACAAAGCAAAAATCCTACGCGTTGGTTAACAGAATGGGCACCTGAACCCCGTGATGTCTATTGGAAGAATCTAGCTATACCGTTTGTTTCTCTGAGCATCCGAAAACTTGTCGTCTCAATCACAGTATTTTCTCTTGTGGTTTTTTACATGATTCCCATTACTTTTGTTCAATCCCTTGCAAATCTTGAAGGTCTTGAAAAAGTTGCTCCTTTTCTCCGGCCAGTCATTGAATTAAAGTTGATCAAATCATTCTTACAAGGCTTTCTGCCTGGTTTAGCATTAAAAATCTTCTTATACCTACTTCCAACTGTTCTGATGATGATGTCAAAAATGGAAGGCTATTTATCACTTTCTGTAATTGAGAGAAGGACAGCAGATAAGTATTATTATTTTATGCTAGTGAATGTATTTCTTGGGAGCATTATAGCTGGAACAGCATTCGAACAGCTGTATTATTTTCTGCATCAGTCTCCCACCGAGATTCCAAGAACTATTGGAGTATCTATACCGATGAAAGCCACTTTCTTCATGACTTATATAATGGTTGATGGTTGGGCTGGCATTGCCGGTGAGATTCTTCGGCTGAAGCCTCTTGTGATATATCATCTGAAAAACATGTTCATCGTCAAAACAGACAGAGATAGAGAAAAGGCAATGAATCCCGGCAGCATTGGTCTTCCTGAGAATCTTCCTACTCTGCAACTTTATTTTCTTCTGGGACTGGTTTATGCTGTGGTTACTCCATTGCTTCTCCCTTTTGTTCTAGTATTCTTTGTGTTTGCCTTCCTTGTTTATAGACACCAGATTATTAATGTTTACAACCAAGAATACGAAAGTGCTGGAGCATTCTGGCCTCATGTCCACAGCCGTATTATCGCAAGCTTGTTAATGTCCCAGCTGTTGCTGCTTGGCTTACTGAGCACAAAAAAGGCTGCGCAGTCAACCCCTTTGCTCATTATTCTGCCTGTGCTGACTATTTGGTTTCACAAGTACTGTAAAATTCGATTCGAACCTGCTTTTAGAAAATACCCTCTGGAGGAGGCAATGGAGAAGGATGCAATGGAGAGAGCCTCTGAGCCCAACCTTAATCTCAAGGCATATTTAGCAGATGCATATCTTCATCCCATATTCGGAATGTTCGACTACTTGGAAACCTCGCAAGTAAGCTCATCCCAAGCAACCAAGCTCGGAATGTTTGAGGACTTGGAAATTGGCGGGATTTTAACTGATAAGGGCCAAATCTCACAAGTTAGCTCATCCCACGAAACCAAGCTGACCTCCATTTCTTCACCTTACTATGCATACCATCATGCTTCATTGCCGCATCATCAACATGACGGTGATTCATTTCGTCGGTATCAACACGATGATGATGTTTTATCACCTCATTATGTATATTATCCTGATGTATAATCAATTGAGTAGCTCCATTGCAATGCTTATACAGCTCATGCTTATTAGTTCTTTTAGGTTGCATCCCTTCATGCAAGTGTGAATACCTATAGCAACTGTTTATTGAGCCATCTAATCAATAAGTTGTCAAAGTCTAGAATCAATCTTCTCATTTCACATCATTCTTTGTACAAAAATTAAAATATCATCTTGTTAAGCTTGCTATATATGTGAATAGCATTGTGCTATAGTAGTTAAAGCTTATGATTTATTATCTAAGTCTTGGATTCAAATCTCAC

Network for GWHGAAEX006661

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13967.5	RSN1_TM	7	179	2.60E-43
PF14703.5	PHM7_cyt	200	362	7.10E-46
PF02714.14	RSN1_7TM	373	645	1.00E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.870
SRP064423	SRR2545915	Juvenile tuber	3.150
SRP108465	SRR5643513	five period of Gastrodia elata	4.360
	SRR5643514	five period of Gastrodia elata	4.480
	SRR5643515	five period of Gastrodia elata	4.470
	SRR5643524	five period of Gastrodia elata	3.200
	SRR5643525	five period of Gastrodia elata	5.470
	SRR5643528	five period of Gastrodia elata	6.290
	SRR5643658	five period of Gastrodia elata	6.950
	SRR5643659	five period of Gastrodia elata	2.260
	SRR5643660	five period of Gastrodia elata	1.840
	SRR5643661	five period of Gastrodia elata	1.850
	SRR5643662	five period of Gastrodia elata	1.540
	SRR5643663	five period of Gastrodia elata	2.140
	SRR5643664	five period of Gastrodia elata	1.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.940
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.330
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.370
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.440
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.220
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.220
SRP279888	Gastro	Gastrodia elata tuber	1.44
	Juven	Juvenile tuber	3.68
	Mother_Gastro	Mother tuber of Gastrodia elata	1.50
	Mother_Juven	Mother tuber of Juvenile	2.30