Gene detail

Detail information of GWHGAAEX006664/evm.TU.scaffold_188.47

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|429216836\|ref\|YP_007174826.1\|	9.00E-09	thioredoxin [Caldisphaera lagunensis DSM 15908]
KOG	KOG1672	2.00E-101	ATP binding protein
nr	gi\|743773178\|ref\|XP_010916923.1\|	7.36E-116	PREDICTED: thioredoxin domain-containing protein PLP3A-like [Elaeis guineensis]
Swissprot	tr\|Q8LCV1\|PLP3B_ARATH	6.00E-103	Thioredoxin domain-containing protein PLP3B
trEMBL	tr\|W1NER7\|W1NER7_AMBTC	3.00E-110	Uncharacterized protein {ECO:0000313\|EMBL:ERM94252.1}
TAIR	AT5G66410	2.00E-101	phosducin-like protein 3 homolog

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000191	1334172	1406218	-

Transcript Sequence
>GWHTAAEX006664 ATGGCGGAGCTCTCAGAGACGTACGCATGCGCTCCGTCTACAGGGCGCGGCCGCGGAATTCTGATCTCCGGCGATCCCAAGTCCGACTCCATCACTTTCTGCAATGGTCGGGCGGTGATCATCCGGCGGCTGGGCGAGCCGATGGACGTGTGGATCTATGGCGAGCATGCGCGCCCGACAACCGTGGCGCGCTTCTCGCCCAACGGCGAGTGGATTGCTTCTGCCGACATCTCCGGCACGTGGTCTCCTGACAGCCAGCGCATCGTTGCCTCAGGCGATGGAAAGGGAAAATCCTTCGTTCGTGCATTCATGCAACGAGAGGCAGCAGCAGCTAATTGGGCATCGCTGAAGACGATTTGGAGGCGATTTACGGCTTCCCCTTCAGCGTGGCCGGTGGGCAACATCTTCGCTCGAGTCTCATTTGCTTCACTTTCTCATTTTCCTGGTGACCTCTACACCTTGTGGTCTATTGTGCTTTGTCTTGTTCTTTGTTTTTGTTGTTTTTCTTATTTCGATGACTTTTTCCTTGCTTTGATGCCTCAACCGGTGCGATATTTTCCATCAAGCATACACGCCCCTATCGGCCCGCATGCATGCAGCAGCCGCGGGCCCGTGCATTGGGATGTCGTGCGTGCAGTCCCTCCGGCGAGACAGCGTCGACGAGACCGCGTCGCGGTCCCGAGTGAGCTACTGCACAAGGTCAATCGCTTCGTCGCTTCGTCCCTTCGTCCTTCTCCGCGATACCTCGCCGGAAGAACCTTTGCTTGCTCGCGTGCATCGGCAAAAATGGATCCCGACTCTTTCCGATCGACGATGTCCAATTTGGCGCTCGATAATGTGATGGCAGCGGCGGCTCGAGACTATCAAAAGGAGTTGCTCGCTAATGGGAAGGCACAAGCATCTCATACAACCACCGATGAGGTTGACCTTGACGAATTGCTGGATGACCCCGAACTAGAAAAAATGCATGCTGAACGGATTGCTGCTTTAAAGAAAGAAGCTGAGAAGAGAGAAGTACTGAAAAGGCAAGGGCATGGTGAGTACAGGGAGATAACGGAAGCTGATTTTCTAGGTGAAGTGACAGGAAGCAAGAAAGTCATCTGCCATTTCTACCACCGTGAATTTTACCGTTGCAAGATAGTGGATAAGCATATGAAGGCTTTGGCTCCAATTCATGTTGATACAAAATTCATCAAATTAGATGCGGAATATTCACCATTCTTCGTAAAGAAATTGGTAATCCAAACACTGCCTTGTGTTGTTCTGTTCAGGGATGGGATTGGATATGATAGATTGATAGGGTTTCAAGAACTGGGAAGCAAAGATGATTTCACCACGAGGTCCTTAGAACAACTTCTTGAGAGAAAAGGCATCATTGAACGGAAGCACGGCGGCGACGATGATGATGAAGAGACTGTCAGAAGTTGCAGTATTAGGGCTTCGGCTATTTCAGGTTCTGATTCCGACTAA

Network for GWHGAAEX006664

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	93.290
SRP064423	SRR2545915	Juvenile tuber	57.380
SRP108465	SRR5643513	five period of Gastrodia elata	37.320
	SRR5643514	five period of Gastrodia elata	29.060
	SRR5643515	five period of Gastrodia elata	30.810
	SRR5643524	five period of Gastrodia elata	28.330
	SRR5643525	five period of Gastrodia elata	26.910
	SRR5643528	five period of Gastrodia elata	23.060
	SRR5643658	five period of Gastrodia elata	23.800
	SRR5643659	five period of Gastrodia elata	32.400
	SRR5643660	five period of Gastrodia elata	35.030
	SRR5643661	five period of Gastrodia elata	37.400
	SRR5643662	five period of Gastrodia elata	42.110
	SRR5643663	five period of Gastrodia elata	34.050
	SRR5643664	five period of Gastrodia elata	39.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	61.010
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	39.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	52.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.200
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	42.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.590
SRP279888	Gastro	Gastrodia elata tuber	60.70
	Juven	Juvenile tuber	59.90
	Mother_Gastro	Mother tuber of Gastrodia elata	33.74
	Mother_Juven	Mother tuber of Juvenile	51.25