Detail information of GWHGAAEX006665/evm.TU.scaffold_188.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428313453|ref|YP_007124430.1|0chaperonin GroL [Microcoleus sp. PCC 7113]
KOGKOG03560Mitochondrial chaperonin, Cpn60/Hsp60p
nrgi|743859387|ref|XP_010942728.1|0PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Elaeis guineensis]
Swissprottr|P08927|RUBB_PEA0RuBisCO large subunit-binding protein subunit beta, chloroplastic (Precursor)
trEMBLtr|B9SBN5|B9SBN5_RICCO0Rubisco subunit binding-protein beta subunit, rubb, putative {ECO:0000313|EMBL:EEF38983.1}
TAIRAT1G554900chaperonin 60 beta

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000019114198251487753-
Transcript Sequence

Network for GWHGAAEX006665

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00118.23Cpn60_TCP11376409.60E-104
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04077groEL, HSPD1 RNA degradation map03018
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName
GO:0042026Biological Processprotein refolding
GO:0006457Biological Processprotein folding
GO:0005524Molecular FunctionATP binding
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms77.840
SRR2545915Juvenile tuber157.980
SRP108465SRR5643513five period of Gastrodia elata61.240
SRR5643514five period of Gastrodia elata62.340
SRR5643515five period of Gastrodia elata69.530
SRR5643524five period of Gastrodia elata57.770
SRR5643525five period of Gastrodia elata51.390
SRR5643528five period of Gastrodia elata50.040
SRR5643658five period of Gastrodia elata58.880
SRR5643659five period of Gastrodia elata91.140
SRR5643660five period of Gastrodia elata85.100
SRR5643661five period of Gastrodia elata97.510
SRR5643662five period of Gastrodia elata154.750
SRR5643663five period of Gastrodia elata161.390
SRR5643664five period of Gastrodia elata127.380
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_190.750
SRR6049655Rhizomagastrodiae_C368-T10_good_147.850
SRR6049656Rhizomagastrodiae_C368-T07_good_196.700
SRR6049657Rhizomagastrodiae_C368-T07_good_182.600
SRR6049658Rhizomagastrodiae_C368-T04_good_161.820
SRR6049659Rhizomagastrodiae_C368-T04_good_160.180
SRR6049660Rhizomagastrodiae_C368-T01_good_163.730
SRR6049661Rhizomagastrodiae_C368-T04_good_180.980
SRR6049662Rhizomagastrodiae_C368-T01_good_158.080
SRR6049663Rhizomagastrodiae_C368-T01_good_147.720
SRR6049664Rhizomagastrodiae_C368-T10_good_152.480
SRR6049665Rhizomagastrodiae_C368-T10_good_152.480
SRP279888GastroGastrodia elata tuber 147.08
JuvenJuvenile tuber139.41
Mother_GastroMother tuber of Gastrodia elata 38.80
Mother_JuvenMother tuber of Juvenile 66.76