Detail information of GWHGAAEX006671/evm.TU.scaffold_188.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|29375000|ref|NP_814153.1| | 3.00E-07 | chitinase family 2 protein [Enterococcus faecalis V583] |
| KOG | KOG4701 | 7.00E-98 | Chitinase |
| nr | gi|242037293|ref|XP_002466041.1| | 1.81E-109 | hypothetical protein SORBIDRAFT_01g050530 [Sorghum bicolor] |
| Swissprot | tr|P29060|CHIA_TOBAC | 1.00E-105 | Acidic endochitinase (Precursor) |
| trEMBL | tr|C5WNN3|C5WNN3_SORBI | 7.00E-110 | Putative uncharacterized protein Sb01g050530 {ECO:0000313|EMBL:EER93039.1} |
| TAIR | AT5G24090 | 7.00E-98 | chitinase A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000191 | 1691422 | 1692833 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006671
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00704.27 | Glyco_hydro_18 | 24 | 285 | 9.20E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01183 | E3.2.1.14 | Metabolic pathways | map01100 |
| Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.020 |
| SRR2545915 | Juvenile tuber | 4.460 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 71.160 |
| SRR5643514 | five period of Gastrodia elata | 184.320 | |
| SRR5643515 | five period of Gastrodia elata | 101.990 | |
| SRR5643524 | five period of Gastrodia elata | 125.490 | |
| SRR5643525 | five period of Gastrodia elata | 0.570 | |
| SRR5643528 | five period of Gastrodia elata | 2.380 | |
| SRR5643658 | five period of Gastrodia elata | 3.000 | |
| SRR5643659 | five period of Gastrodia elata | 16.840 | |
| SRR5643660 | five period of Gastrodia elata | 24.420 | |
| SRR5643661 | five period of Gastrodia elata | 19.690 | |
| SRR5643662 | five period of Gastrodia elata | 24.840 | |
| SRR5643663 | five period of Gastrodia elata | 22.590 | |
| SRR5643664 | five period of Gastrodia elata | 15.820 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 187.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 292.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 169.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 72.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 45.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 42.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 23.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 171.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 77.990 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 354.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 354.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.95 |
| Juven | Juvenile tuber | 2.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.68 | |
| Mother_Juven | Mother tuber of Juvenile | 3.07 |