Detail information of GWHGAAEX006673/evm.TU.scaffold_189.5
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|695007809|ref|XP_009390465.1| | 0 | PREDICTED: auxin response factor 19-like isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q6Z2W3|ARFE_ORYSJ | 0 | Auxin response factor 5 |
| trEMBL | tr|I1Q505|I1Q505_ORYGL | 0 | Auxin response factor {ECO:0000256|RuleBase:RU004561} |
| TAIR | AT5G20730 | 0 | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000188 | 249813 | 260091 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006673
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02362.20 | B3 | 139 | 240 | 1.20E-20 |
| PF06507.12 | Auxin_resp | 265 | 348 | 4.10E-34 |
| PF02309.15 | AUX_IAA | 1013 | 1101 | 7.70E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3-ARF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009725 | Biological Process | response to hormone |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 35.730 |
| SRR2545915 | Juvenile tuber | 28.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 36.700 |
| SRR5643514 | five period of Gastrodia elata | 42.700 | |
| SRR5643515 | five period of Gastrodia elata | 21.010 | |
| SRR5643524 | five period of Gastrodia elata | 27.770 | |
| SRR5643525 | five period of Gastrodia elata | 24.910 | |
| SRR5643528 | five period of Gastrodia elata | 15.220 | |
| SRR5643658 | five period of Gastrodia elata | 61.310 | |
| SRR5643659 | five period of Gastrodia elata | 16.390 | |
| SRR5643660 | five period of Gastrodia elata | 14.760 | |
| SRR5643661 | five period of Gastrodia elata | 14.760 | |
| SRR5643662 | five period of Gastrodia elata | 10.490 | |
| SRR5643663 | five period of Gastrodia elata | 14.600 | |
| SRR5643664 | five period of Gastrodia elata | 15.160 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 52.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 64.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 49.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 63.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 73.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 79.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 90.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 76.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.910 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 64.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 38.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 38.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.90 |
| Juven | Juvenile tuber | 38.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.73 | |
| Mother_Juven | Mother tuber of Juvenile | 35.84 |