Gene detail

Detail information of GWHGAAEX006680/evm.TU.scaffold_189.20

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|46446740\|ref\|YP_008105.1\|	isoamylase [Candidatus Protochlamydia amoebophila UWE25]
KOG	KOG0470	1,4-alpha-glucan branching enzyme/starch branching enzyme II
nr	gi\|672156930\|ref\|XP_008798152.1\|	PREDICTED: isoamylase 1, chloroplastic isoform X1 [Phoenix dactylifera]
Swissprot	tr\|O04196\|ISOA1_ARATH	Isoamylase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A067KRF0\|A0A067KRF0_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP34860.1}
TAIR	AT2G39930	isoamylase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000188	826324	894866	-

Transcript Sequence
>GWHTAAEX006680 TCACAATAAATATCAGAGTTTTTAAAATCCCGCGTACCCAAATTTGTGCATCGGTACAGGCCAAATCTAAATTGAACCGCACCCTCTTCCCTCGGTGTTGTTACAATCACCTGCAGAATGGAACTTGCCCTGGCCGCTTCGATCCCCGCAGAAGCTCCGGGCCGCTATCGCAAGAGCAGAAAAATGTACAATCTACGGCTTCAACCGAGTCTTCCCCGCAAGGAGAAAAGACCTGCAAAAATTTCGATAGTTGATTCTGCTCGAATAGAATCGTTGGTAGCAGGTGCTGTCGGCGGCAGCGCGGCCGAGGTCGAAGCCGATGTTGATGCGATGCCGGGGCTTAGCGCGTGTAAGGTGTTTGCGGGAATGCCGCTGCCACTCGGTGCCACGGCAACTGAAGCTGGAATGAACTTCGCTGTCCACTCCAGCGGTGCTGTCGGCGGCAGCGCGGCCGAGGTCGAAGCCGATGTTGATGCGATGCCGGAGCTTAGCGCGTGTAAGGTGTTTGCGGGAATGCCGCTGCCACTCGGTGCCACGGCAACTGAAGCTGGAATGAACTTCGCTGTCCACTCCAGCGGTGCTTTGGCGGCCACCCTCTGCCTTTTTACTCTTCCAGACTTGAAGAAGAACCGAGTTACCAAAGAGATTCTGCTTGATCCACTAATCAACAAGACGGGGAGTATTTGGCATGCCTTTCTGGAAGGCAATTTCAAGGATATTGTATATGGTTACAAGTTTGATGGAAAGTTCTCTCCAGAAGAGGGACACTACTTCAATAATTCTCGTGTTGTTCTAGATCCATATTCCAAGGCAGTCATAAGTAGGGGCAAGTATGGTATCCTTGAACCAGATGGAAATTGTTGGCCTCAAATGGCTGGCATGCTACCTCTTTTTGGCAGTGAGTTTGATTGGGAAGGTGACTTACCTTTGCGGTATCCTCAAAAAGATCTGATAATTTATGAAATGCATGTTCGTGGTTACACAAAGCATGAATCGAGCAAAGTGGATTTTCCTGGAACTTACATAGGTGTTGTACAAAAGCTGGACCACTTGAAGGAGCTTGGCGTCAACTGTATTGAGCTTATGCCATGTCAGGAATTCAATGAGCTTGAATACTTTAGAAGTTCTTTGTGTAGTGAGAACAGGATGAATTTCTGGGGATACTCAACAATCAACTTTTTTTCACCCATGCTAAGATATTCATCTACTAGTATGTCTGATCGTGGTCTTGATGCGATAGATGAATTCAAAATGCTTGTTAGAGAAGCTCATAAACGTGGCATTGAGGTGATCATTGATATTGTGTTAAATCATACTGCCGAGGGGAATGAGAATGGTCCCATATTCTCATTCAGAGGCATTGACAACAGAGCCTATTATATGATTGCACCGAAGGGTGAGTTCTACAATTATTCAGGCTGTGGGAATACCTTCAATTGTAGCCATCCGATCGTTCGTCAATTCATTAAAGATTGTATGAGATACTGGGTTACGGAAATGCATATTGATGGCTTTCGCTTTGACCTTGCTTCCATAATGACAAGGGCAAGCAGTTTATGGGATTCAACTAATACATATGGTAGAGAAGTAGAAGGAGACCTAATGACCACGGGAACTCCTCTTAGCACCCCTCCAGTCATTGACATGATATGTAATGATCCAGTTCTTAGAGGGGTCAAGCTGATTGCTGAGGCATGGGATGCAGGAGGCCTTTATCAAGTTGGCCAGTTCCCTCGTTGGGGTATTTGGTCAGAATGGAATGGACAGTATCGCGATGTTGTGCGGCAATTTATAAAGGGTACTGATGGGTTTGCTGGAGCTTTTGCTCAATGCCTTTGTGGGAGCCCCAATCTCTATCAAGAGGGAGGGAAGCCTTGGAACAGCATAAACTTCATTTGTGCGCACGATGGATTCACTCTGGCAGATCTGGTGACATACAATAACAAAAATAACTTGGCCAATGGGGAAGATAATAGAGATGGAGAGAATCACAACTTGAGCTGGAACTGCGGCGAGGAAGGTGAGCTCGCAGGGATATCTGTTCGGAGGTTGAGGAAAAGGCAAGTGCGGAACTTCTTTCTCTGCCTTATGGTTTCCCAGGGCGTTCCTATGATTCATATGGGTGATGAATACGGCCACACAAAAGGAGGGAACAACAACACATACTGCCACGACAATTATCTAAACTACTTCAGGTGGGACAGAAAGGAAGAAGCCTCATCTGACTTCTACAGATTCTGCCGCCTCATGATCCAATTCCGCCGGGACTGTGAATCCCTCCACCTCGATGAGTTCCCCACAGGCAGAAGGCTGCAATGGCACGGCCACCTCCCCAACAAGCCCGACTGGTCCGAGACAAGCCGGTTCGTTGCATTCTCACTGATAGACTCCAAGATGGGGGAGATCTACATAGCCTTCAACAGCAGCCACCGGCCGACGTTCATCACCCTTCCGGACAGACCGGGCTTCCGGTGGGACCCTCTCGTGGACACGGGCAAGCCTGCGCCCTTCGATTTCCTCTCGGAAGAGTTCGATAAGAGCACAGAGTCTCTGCAGGTCGCCCATTTCATCCACGACAATCTTTACCCTGTGCTCAGTTACTCTTCCATTATCCTCTTGCTCCGCCCGGATGCCTTCGAGCCCTGATCCTCTATGCTATCCGCTCCAATATTCCTCTCAATGTTGCACAAACAAGTCGTTTTAAATAGGTTCAATTAGAGTACTAATAAGGGTATGTATACAATAATACAGCGGTGAAACAAATAAGAATTCTTTTACTCATGATCTTTAAAATACTACAGCAGTGATATTAGATCTACAGCAGGGAAGCAGATAGGGAAACCCATCTTTCCTACTAGTTTACAAAAGGGAAGGAGTGAGGCAACGGTGATGAACAAAGAAGAATTGAATCCAATATAAGCGTTTCTGATATTAGAAACAGGGCTAAGGAGGAGTGGGAGAGGTGGCGGAGCGCCACATGTCGGCAAGGGAGCGAAGTAGGGGGGGTATGGCGGAGAGAAGGCTGCCGGAGGCGGTGGCGATGGCAAAGGACTCGAGGAAGCCGGGCTTGGAGTCGAGTTTCAAGCCGAGGACGGCCACCCGGGTGTTGGTAATGTCGAGCTTGCGCTGAAGATCACCGGAGGCTTCGGGGGAGAGGCGGTCACGACGGGAAGAGGCGGCGGCGCTCCGGCGGAGGAGGGACTGAAGGTCTTCGATGGCCTTCAGGGACGCGGCGCGGGCTTCCAGCCCCTGCGACTCGTAAAAGGACAGCATCTCCTCCGGGCTGGGAGGCCCGCGCTTTATCTTGCTCGGCTTTTCGTCTTGCACCTGCTCCATTATTTTCATGGCCGATGCCGCTAGGGTTTCTTTTTCCGGCTTTGGATTTTACAGAGCCGAGAAGGTAGGCGGGGTTTTGGCATTGTATTTAGTTTTGTTTTGCCGCTCGATTTATTTTAGTACGATAATGAGTAATGCCC

Network for GWHGAAEX006680

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02922.17	CBM_48	136	230	1.60E-13
PF00128.23	Alpha-amylase	300	421	2.10E-11

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM48

KEGG pathway

KO	Enzyme	pathway	mapID
K01214	ISA, treX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.480
SRP064423	SRR2545915	Juvenile tuber	11.870
SRP108465	SRR5643513	five period of Gastrodia elata	11.380
	SRR5643514	five period of Gastrodia elata	9.950
	SRR5643515	five period of Gastrodia elata	9.870
	SRR5643524	five period of Gastrodia elata	9.060
	SRR5643525	five period of Gastrodia elata	4.180
	SRR5643528	five period of Gastrodia elata	2.800
	SRR5643658	five period of Gastrodia elata	4.290
	SRR5643659	five period of Gastrodia elata	9.570
	SRR5643660	five period of Gastrodia elata	12.200
	SRR5643661	five period of Gastrodia elata	10.710
	SRR5643662	five period of Gastrodia elata	9.780
	SRR5643663	five period of Gastrodia elata	9.090
	SRR5643664	five period of Gastrodia elata	9.280
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	14.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.070
SRP279888	Gastro	Gastrodia elata tuber	11.99
	Juven	Juvenile tuber	9.83
	Mother_Gastro	Mother tuber of Gastrodia elata	8.51
	Mother_Juven	Mother tuber of Juvenile	7.43