Detail information of GWHGAAEX006692/evm.TU.scaffold_189.34
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672156900|ref|XP_008798138.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Phoenix dactylifera] |
| Swissprot | tr|O64705|PP184_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g34400 |
| trEMBL | tr|A0A061GR29|A0A061GR29_THECC | 0 | Pentatricopeptide repeat superfamily protein isoform 1 {ECO:0000313|EMBL:EOY31976.1} |
| TAIR | AT2G34400 | 0 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000188 | 1615505 | 1618920 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006692
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 149 | 174 | 0.0023 |
| PF01535.19 | PPR | 176 | 206 | 2.20E-09 |
| PF01535.19 | PPR | 249 | 274 | 4.50E-05 |
| PF13041.5 | PPR_2 | 278 | 321 | 2.80E-11 |
| PF13041.5 | PPR_2 | 376 | 425 | 1.90E-07 |
| PF01535.19 | PPR | 452 | 479 | 0.00041 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.290 |
| SRR2545915 | Juvenile tuber | 9.020 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.400 |
| SRR5643514 | five period of Gastrodia elata | 9.830 | |
| SRR5643515 | five period of Gastrodia elata | 9.230 | |
| SRR5643524 | five period of Gastrodia elata | 9.620 | |
| SRR5643525 | five period of Gastrodia elata | 8.290 | |
| SRR5643528 | five period of Gastrodia elata | 3.390 | |
| SRR5643658 | five period of Gastrodia elata | 5.140 | |
| SRR5643659 | five period of Gastrodia elata | 15.960 | |
| SRR5643660 | five period of Gastrodia elata | 20.710 | |
| SRR5643661 | five period of Gastrodia elata | 14.480 | |
| SRR5643662 | five period of Gastrodia elata | 12.030 | |
| SRR5643663 | five period of Gastrodia elata | 16.220 | |
| SRR5643664 | five period of Gastrodia elata | 14.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.640 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.640 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.51 |
| Juven | Juvenile tuber | 10.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.64 | |
| Mother_Juven | Mother tuber of Juvenile | 3.95 |