Gene detail

Detail information of GWHGAAEX006695/evm.TU.scaffold_189.37

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|313672810\|ref\|YP_004050921.1\|	3.00E-38	wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672]
KOG	KOG0316	8.00E-159	Conserved WD40 repeat-containing protein
nr	gi\|695033732\|ref\|XP_009404349.1\|	0	PREDICTED: WD repeat domain-containing protein 83 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q42384\|PRL1_ARATH	5.00E-24	Protein pleiotropic regulatory locus 1
trEMBL	tr\|M0T6K8\|M0T6K8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P13100_001}
TAIR	AT5G64730	8.00E-159	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000188	1647023	1649905	+

Transcript Sequence
>GWHTAAEX006695 CATTGATATAGCGGAAACTAGACTTCATGGTGCAACTTCAAACGAATTGGAGTGGTCTTACAATAGGCGATTGGACAATTGTAAGGCTTTAAGTGGTTTTGTGTTAACCACTATTCATCTGAGATGCGGAAGGGGTTGAGTTGGGCCAATGAGATGCGGAAGTGGTTGAGTCGGGCCAAAGGAGATGCTGAGGACCTTGTGCTTTGGGCACTATCTAAGTGTCAAAATGGTACTTAAATGCCAAGTGGGCCTCAGAGGATTATTGAGGATAAGAGTCCAATACTTGGCATAACAAGTAGGTACAATTAATTTGCATTATAATTTTATAGGAAATCCTCCACCCTTCACAAAAGCAGCATATTTGTTTTATGTTTCAATCCAGAGTAAAAAAAGATTGATTTATTTTGAAATTTTGGGGGATAAATTAAAAGAGATTTGGATGCTTTTGGAGGTAGGGCATGGCGTCGGCGAGCAGGACGGAGCTGCCAATAAAGGAGGCGGGCGTGCTTCGAGGGCATCTGGGGACAGTTTTAGCTGTCCGGTTCAACGGTGACGGAAACTACTGCCTGAGCTGCGGCAAGGACTCCACGCTGCGCCTCTGGAATCCTCACCGTGGAATCCACATTAAGACATACAAAGCCCATGGCCGCGAGGTCCGCGACGTTCATGTCTCCTCTGACAACGCCAAACTTTGTTCGTGCGGCGGGGATCGGCAGATTTTTAGCTGGGACGTTGCAACGGGGCGTGTGATACGGAAATTTCGTGGCCATGATAGTGAGGTGAATGCTGTGAAGTTCAATGAGTATGATTCGGCAGTTGTATCTGCTGGCTATGATCGTTCTGTGAGGGCTTGGGATTGCAGATCTCAAAGCATAGAGCCAATTCAGATTATTGATACATTTACGGATAGTGTGATGTCCATATGTTTGACAAAATTTGAAATTATAGCCGGAAGTGTTGATGGAACTGTTCGGACATTTGACATTCGCATTGGAAGAGAGCTTGTTGATGACTTGAAACAGCCGGTCAATTGCATCTCTTTGTCTAATGATGCTAACTGTATACTTGCTAGTTGCCTAGATTCTACCCTACGGCTTCTTGACAGGACCACTGGAGAACTCCTACAAGAGTATAAGGGTCACATTTCTAGGTCTTTCAAGATGGATTACTGTCTTACAAATACTGATGCACACGTAACTGGAGGATCTGAAGATGGTTTTGTTTATTTCTGGGATTTAGTGGATGCATCCGTGGTTTCTAGTTTTAGGGCACATTCTTCTGTTGTGACAAGCGTGAACTACCATCCCAAGGATTGTTGCATGTTAACATCCTCTGTTGATAGCACTATCCGCATCTGGAAACCATAGGCCAATTGACTTCAACCTGATTCTACTGCCTTATTCAATTCCTTGAAGCATTGGCAAAAATCAGTGGTGGGGTTTGCTTCATTATTTGAGACTGACGGTGTGTCGTGAGCAATAACTTGCAGAAAGATTTAAATTTCATATCACTTGTTACATATCCGGTACTAAAATTTTGAAGTCTATAAATTTATTACTTATTAGTATTTTGCTTTTTCCGAGTCTGTGATTATTTGTTGGTAACAGCAGAATTATTTGGATAGTTCATTTGGAAACATAAAAATTTTATTCTTTACTTGATAAGGTCTGACAATAAAAGAGCAAGCTCAT

Network for GWHGAAEX006695

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	15	49	7.80E-07
PF00400.31	WD40	55	91	0.0012
PF00400.31	WD40	96	133	2.40E-05
PF00400.31	WD40	219	259	0.091
PF00400.31	WD40	266	301	1.20E-05

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.310
SRP064423	SRR2545915	Juvenile tuber	15.060
SRP108465	SRR5643513	five period of Gastrodia elata	18.980
	SRR5643514	five period of Gastrodia elata	23.350
	SRR5643515	five period of Gastrodia elata	18.540
	SRR5643524	five period of Gastrodia elata	21.840
	SRR5643525	five period of Gastrodia elata	19.300
	SRR5643528	five period of Gastrodia elata	15.390
	SRR5643658	five period of Gastrodia elata	14.450
	SRR5643659	five period of Gastrodia elata	18.730
	SRR5643660	five period of Gastrodia elata	16.690
	SRR5643661	five period of Gastrodia elata	18.300
	SRR5643662	five period of Gastrodia elata	13.480
	SRR5643663	five period of Gastrodia elata	15.410
	SRR5643664	five period of Gastrodia elata	13.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.260
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.910
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.290
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.250
SRP279888	Gastro	Gastrodia elata tuber	17.52
	Juven	Juvenile tuber	27.67
	Mother_Gastro	Mother tuber of Gastrodia elata	26.76
	Mother_Juven	Mother tuber of Juvenile	27.36