Detail information of GWHGAAEX006699/evm.TU.scaffold_19.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG27782.00E-178Ubiquitin C-terminal hydrolase
nrgi|743875919|ref|XP_010907454.1|0PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like isoform X1 [Elaeis guineensis]
trEMBLtr|A0A061EW93|A0A061EW93_THECC0Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU361215}
TAIRAT1G656502.00E-178Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000205176779439-
Transcript Sequence

Network for GWHGAAEX006699

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01088.20Peptidase_C1232061.60E-69
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUCH

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0016579Biological Processprotein deubiquitination
GO:0004843Molecular Functionthiol-dependent ubiquitin-specific protease activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.870
SRR2545915Juvenile tuber25.290
SRP108465SRR5643513five period of Gastrodia elata31.500
SRR5643514five period of Gastrodia elata36.520
SRR5643515five period of Gastrodia elata34.030
SRR5643524five period of Gastrodia elata37.420
SRR5643525five period of Gastrodia elata33.310
SRR5643528five period of Gastrodia elata30.070
SRR5643658five period of Gastrodia elata30.670
SRR5643659five period of Gastrodia elata35.250
SRR5643660five period of Gastrodia elata39.360
SRR5643661five period of Gastrodia elata39.780
SRR5643662five period of Gastrodia elata40.900
SRR5643663five period of Gastrodia elata38.820
SRR5643664five period of Gastrodia elata46.180
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_138.090
SRR6049655Rhizomagastrodiae_C368-T10_good_126.120
SRR6049656Rhizomagastrodiae_C368-T07_good_136.130
SRR6049657Rhizomagastrodiae_C368-T07_good_134.070
SRR6049658Rhizomagastrodiae_C368-T04_good_139.020
SRR6049659Rhizomagastrodiae_C368-T04_good_129.930
SRR6049660Rhizomagastrodiae_C368-T01_good_133.940
SRR6049661Rhizomagastrodiae_C368-T04_good_131.920
SRR6049662Rhizomagastrodiae_C368-T01_good_139.020
SRR6049663Rhizomagastrodiae_C368-T01_good_141.570
SRR6049664Rhizomagastrodiae_C368-T10_good_146.280
SRR6049665Rhizomagastrodiae_C368-T10_good_146.280
SRP279888GastroGastrodia elata tuber 61.93
JuvenJuvenile tuber65.62
Mother_GastroMother tuber of Gastrodia elata 53.50
Mother_JuvenMother tuber of Juvenile 57.00