Detail information of GWHGAAEX006700/evm.TU.scaffold_19.4


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|434404094|ref|YP_007146979.1|0chaperonin GroL [Cylindrospermum stagnale PCC 7417]
KOGKOG03560Mitochondrial chaperonin, Cpn60/Hsp60p
nrgi|672166592|ref|XP_008803228.1|0PREDICTED: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like [Phoenix dactylifera]
Swissprottr|P08927|RUBB_PEA0RuBisCO large subunit-binding protein subunit beta, chloroplastic (Precursor)
trEMBLtr|D7U0E8|D7U0E8_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI36094.3}
TAIRAT3G134700TCP-1/cpn60 chaperonin family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000020112589124927+
Transcript Sequence

Network for GWHGAAEX006700

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00118.23Cpn60_TCP1895669.50E-95
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04077groEL, HSPD1 RNA degradation map03018
Longevity regulating pathway - wormmap04212

Gene Ontology

GO term OntologyName
GO:0006457Biological Processprotein folding
GO:0042026Biological Processprotein refolding
GO:0005524Molecular FunctionATP binding
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms51.570
SRR2545915Juvenile tuber272.710
SRP108465SRR5643513five period of Gastrodia elata28.040
SRR5643514five period of Gastrodia elata28.460
SRR5643515five period of Gastrodia elata29.380
SRR5643524five period of Gastrodia elata23.520
SRR5643525five period of Gastrodia elata59.600
SRR5643528five period of Gastrodia elata58.340
SRR5643658five period of Gastrodia elata9.160
SRR5643659five period of Gastrodia elata85.140
SRR5643660five period of Gastrodia elata86.570
SRR5643661five period of Gastrodia elata87.480
SRR5643662five period of Gastrodia elata96.520
SRR5643663five period of Gastrodia elata115.990
SRR5643664five period of Gastrodia elata103.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_162.790
SRR6049655Rhizomagastrodiae_C368-T10_good_120.250
SRR6049656Rhizomagastrodiae_C368-T07_good_149.600
SRR6049657Rhizomagastrodiae_C368-T07_good_147.560
SRR6049658Rhizomagastrodiae_C368-T04_good_141.010
SRR6049659Rhizomagastrodiae_C368-T04_good_124.660
SRR6049660Rhizomagastrodiae_C368-T01_good_128.310
SRR6049661Rhizomagastrodiae_C368-T04_good_150.740
SRR6049662Rhizomagastrodiae_C368-T01_good_161.140
SRR6049663Rhizomagastrodiae_C368-T01_good_134.880
SRR6049664Rhizomagastrodiae_C368-T10_good_129.840
SRR6049665Rhizomagastrodiae_C368-T10_good_129.840
SRP279888GastroGastrodia elata tuber 176.85
JuvenJuvenile tuber82.82
Mother_GastroMother tuber of Gastrodia elata 12.75
Mother_JuvenMother tuber of Juvenile 45.49