Detail information of GWHGAAEX006702/evm.TU.scaffold_19.6
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434402418|ref|YP_007145303.1| | 1.00E-41 | Na+/H+ antiporter NhaD-like permease [Cylindrospermum stagnale PCC 7417] |
| KOG | KOG2639 | 0 | Sodium sulfate symporter and related arsenite permeases |
| nr | gi|698534119|ref|XP_009763772.1| | 0 | PREDICTED: putative transporter arsB [Nicotiana sylvestris] |
| trEMBL | tr|M1CXN0|M1CXN0_SOLTU | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400076949} |
| TAIR | AT1G02260 | 0 | Divalent ion symporter |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 228760 | 245127 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006702
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03600.15 | CitMHS | 27 | 461 | 1.90E-51 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0015700 | Biological Process | arsenite transport |
| GO:0015105 | Molecular Function | arsenite transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.270 |
| SRR2545915 | Juvenile tuber | 5.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.660 |
| SRR5643514 | five period of Gastrodia elata | 30.100 | |
| SRR5643515 | five period of Gastrodia elata | 13.360 | |
| SRR5643524 | five period of Gastrodia elata | 16.990 | |
| SRR5643525 | five period of Gastrodia elata | 38.090 | |
| SRR5643528 | five period of Gastrodia elata | 50.040 | |
| SRR5643658 | five period of Gastrodia elata | 48.830 | |
| SRR5643659 | five period of Gastrodia elata | 1.970 | |
| SRR5643660 | five period of Gastrodia elata | 1.950 | |
| SRR5643661 | five period of Gastrodia elata | 1.280 | |
| SRR5643662 | five period of Gastrodia elata | 2.430 | |
| SRR5643663 | five period of Gastrodia elata | 3.300 | |
| SRR5643664 | five period of Gastrodia elata | 2.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 32.260 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 36.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 46.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 27.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.590 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.41 |
| Juven | Juvenile tuber | 8.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 79.19 | |
| Mother_Juven | Mother tuber of Juvenile | 30.36 |