Detail information of GWHGAAEX006705/evm.TU.scaffold_19.10


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|374996462|ref|YP_004971961.1|4.00E-63DNA/RNA helicase [Desulfosporosinus orientis DSM 765]
KOGKOG03860Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily)
nrgi|743825873|ref|XP_010933130.1|0PREDICTED: ATP-dependent helicase BRM-like [Elaeis guineensis]
Swissprottr|Q6EVK6|BRM_ARATH0ATP-dependent helicase BRM
trEMBLtr|M0U780|M0U780_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP07690_001}
TAIRAT2G460200transcription regulatory protein SNF2, putative

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000020283748346266+
Transcript Sequence

Network for GWHGAAEX006705

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08880.10QLQ6717044.30E-08
PF00176.22SNF2_N120314996.00E-63
PF00271.30Helicase_C152116326.50E-17
PF00439.24Bromodomain218322210.00012
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2

KEGG pathway

KO Enzyme pathway mapID
K11647SMARCA2_4 Thermogenesis map04714

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005524Molecular FunctionATP binding
GO:0005515Molecular Functionprotein binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms177.200
SRR2545915Juvenile tuber90.290
SRP108465SRR5643513five period of Gastrodia elata39.660
SRR5643514five period of Gastrodia elata35.430
SRR5643515five period of Gastrodia elata34.390
SRR5643524five period of Gastrodia elata36.130
SRR5643525five period of Gastrodia elata44.510
SRR5643528five period of Gastrodia elata35.790
SRR5643658five period of Gastrodia elata43.150
SRR5643659five period of Gastrodia elata44.570
SRR5643660five period of Gastrodia elata58.010
SRR5643661five period of Gastrodia elata42.310
SRR5643662five period of Gastrodia elata56.150
SRR5643663five period of Gastrodia elata54.060
SRR5643664five period of Gastrodia elata68.700
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_163.340
SRR6049655Rhizomagastrodiae_C368-T10_good_143.880
SRR6049656Rhizomagastrodiae_C368-T07_good_150.220
SRR6049657Rhizomagastrodiae_C368-T07_good_180.980
SRR6049658Rhizomagastrodiae_C368-T04_good_177.400
SRR6049659Rhizomagastrodiae_C368-T04_good_198.400
SRR6049660Rhizomagastrodiae_C368-T01_good_171.710
SRR6049661Rhizomagastrodiae_C368-T04_good_175.310
SRR6049662Rhizomagastrodiae_C368-T01_good_143.610
SRR6049663Rhizomagastrodiae_C368-T01_good_154.820
SRR6049664Rhizomagastrodiae_C368-T10_good_137.180
SRR6049665Rhizomagastrodiae_C368-T10_good_137.180
SRP279888GastroGastrodia elata tuber 64.64
JuvenJuvenile tuber92.31
Mother_GastroMother tuber of Gastrodia elata 51.76
Mother_JuvenMother tuber of Juvenile 91.52