Detail information of GWHGAAEX006707/evm.TU.scaffold_19.13


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|521462870|ref|YP_008149778.1|2.00E-12RNA-binding protein [Sorangium cellulosum So0157-2]
KOGKOG46613.00E-26Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B)
nrgi|672127868|ref|XP_008787412.1|5.24E-59PREDICTED: serine/arginine-rich splicing factor SR45a-like [Phoenix dactylifera]
Swissprottr|Q84TH4|SR45A_ARATH1.00E-28Serine/arginine-rich splicing factor SR45a
trEMBLtr|M0SI99|M0SI99_MUSAM6.00E-53Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P27330_001}
TAIRAT1G073503.00E-26RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000020388741433387-
Transcript Sequence

Network for GWHGAAEX006707

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_12493175.00E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12897TRA2 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.010
SRR2545915Juvenile tuber13.360
SRP108465SRR5643513five period of Gastrodia elata6.360
SRR5643514five period of Gastrodia elata7.570
SRR5643515five period of Gastrodia elata7.680
SRR5643524five period of Gastrodia elata7.480
SRR5643525five period of Gastrodia elata8.630
SRR5643528five period of Gastrodia elata9.350
SRR5643658five period of Gastrodia elata9.740
SRR5643659five period of Gastrodia elata8.030
SRR5643660five period of Gastrodia elata7.720
SRR5643661five period of Gastrodia elata8.250
SRR5643662five period of Gastrodia elata10.250
SRR5643663five period of Gastrodia elata8.320
SRR5643664five period of Gastrodia elata11.120
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.190
SRR6049655Rhizomagastrodiae_C368-T10_good_19.830
SRR6049656Rhizomagastrodiae_C368-T07_good_18.080
SRR6049657Rhizomagastrodiae_C368-T07_good_110.290
SRR6049658Rhizomagastrodiae_C368-T04_good_111.430
SRR6049659Rhizomagastrodiae_C368-T04_good_111.520
SRR6049660Rhizomagastrodiae_C368-T01_good_113.660
SRR6049661Rhizomagastrodiae_C368-T04_good_111.390
SRR6049662Rhizomagastrodiae_C368-T01_good_112.290
SRR6049663Rhizomagastrodiae_C368-T01_good_112.600
SRR6049664Rhizomagastrodiae_C368-T10_good_110.390
SRR6049665Rhizomagastrodiae_C368-T10_good_110.390
SRP279888GastroGastrodia elata tuber 11.09
JuvenJuvenile tuber9.45
Mother_GastroMother tuber of Gastrodia elata 4.60
Mother_JuvenMother tuber of Juvenile 7.60