Detail information of GWHGAAEX006715/evm.TU.scaffold_19.25


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|268315664|ref|YP_003289383.1|1.00E-43voltage-dependent potassium channel subunit beta [Rhodothermus marinus DSM 4252]
KOGKOG15751.00E-74Voltage-gated shaker-like K+ channel, subunit beta/KCNAB
nrgi|743853423|ref|XP_010940652.1|1.02E-78PREDICTED: probable voltage-gated potassium channel subunit beta [Elaeis guineensis]
Swissprottr|Q40648|KCAB_ORYSJ5.00E-76Probable voltage-gated potassium channel subunit beta
trEMBLtr|M5XCW1|M5XCW1_PRUPE3.00E-78Uncharacterized protein {ECO:0000313|EMBL:EMJ23769.1}
TAIRAT1G046901.00E-74potassium channel beta subunit 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000020849591872283+
Transcript Sequence

Network for GWHGAAEX006715

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00248.20Aldo_ket_red1743014.90E-19
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms28.130
SRR2545915Juvenile tuber19.700
SRP108465SRR5643513five period of Gastrodia elata16.930
SRR5643514five period of Gastrodia elata21.090
SRR5643515five period of Gastrodia elata21.030
SRR5643524five period of Gastrodia elata23.030
SRR5643525five period of Gastrodia elata19.530
SRR5643528five period of Gastrodia elata18.010
SRR5643658five period of Gastrodia elata22.100
SRR5643659five period of Gastrodia elata8.880
SRR5643660five period of Gastrodia elata8.400
SRR5643661five period of Gastrodia elata10.210
SRR5643662five period of Gastrodia elata10.260
SRR5643663five period of Gastrodia elata10.740
SRR5643664five period of Gastrodia elata7.960
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.530
SRR6049655Rhizomagastrodiae_C368-T10_good_150.640
SRR6049656Rhizomagastrodiae_C368-T07_good_125.640
SRR6049657Rhizomagastrodiae_C368-T07_good_117.620
SRR6049658Rhizomagastrodiae_C368-T04_good_118.620
SRR6049659Rhizomagastrodiae_C368-T04_good_115.690
SRR6049660Rhizomagastrodiae_C368-T01_good_119.860
SRR6049661Rhizomagastrodiae_C368-T04_good_119.710
SRR6049662Rhizomagastrodiae_C368-T01_good_128.970
SRR6049663Rhizomagastrodiae_C368-T01_good_120.380
SRR6049664Rhizomagastrodiae_C368-T10_good_137.870
SRR6049665Rhizomagastrodiae_C368-T10_good_137.870
SRP279888GastroGastrodia elata tuber 11.92
JuvenJuvenile tuber9.24
Mother_GastroMother tuber of Gastrodia elata 13.39
Mother_JuvenMother tuber of Juvenile 9.17