Detail information of GWHGAAEX006716/evm.TU.scaffold_19.26


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|392410457|ref|YP_006447064.1|5.00E-23arabinose efflux permease family protein [Desulfomonile tiedjei DSM 6799]
KOGKOG02553.00E-150Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)
nrgi|302143179|emb|CBI20474.3|1.09E-166unnamed protein product [Vitis vinifera]
Swissprottr|Q9LHQ6|OCT4_ARATH1.00E-150Organic cation/carnitine transporter 4
trEMBLtr|F6H2H7|F6H2H7_VITVI2.00E-166Putative uncharacterized protein {ECO:0000313|EMBL:CCB46457.1}
TAIRAT3G206603.00E-150organic cation/carnitine transporter4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000020873199875479+
Transcript Sequence

Network for GWHGAAEX006716

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00083.23Sugar_tr23529.90E-28
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0022857Molecular Functiontransmembrane transporter activity
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.330
SRR2545915Juvenile tuber15.080
SRP108465SRR5643513five period of Gastrodia elata35.130
SRR5643514five period of Gastrodia elata13.670
SRR5643515five period of Gastrodia elata73.010
SRR5643524five period of Gastrodia elata21.740
SRR5643525five period of Gastrodia elata29.770
SRR5643528five period of Gastrodia elata10.490
SRR5643658five period of Gastrodia elata9.910
SRR5643659five period of Gastrodia elata159.660
SRR5643660five period of Gastrodia elata100.050
SRR5643661five period of Gastrodia elata131.200
SRR5643662five period of Gastrodia elata112.710
SRR5643663five period of Gastrodia elata59.470
SRR5643664five period of Gastrodia elata154.570
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.440
SRR6049655Rhizomagastrodiae_C368-T10_good_120.160
SRR6049656Rhizomagastrodiae_C368-T07_good_120.040
SRR6049657Rhizomagastrodiae_C368-T07_good_128.810
SRR6049658Rhizomagastrodiae_C368-T04_good_112.260
SRR6049659Rhizomagastrodiae_C368-T04_good_111.810
SRR6049660Rhizomagastrodiae_C368-T01_good_148.850
SRR6049661Rhizomagastrodiae_C368-T04_good_120.690
SRR6049662Rhizomagastrodiae_C368-T01_good_122.680
SRR6049663Rhizomagastrodiae_C368-T01_good_138.320
SRR6049664Rhizomagastrodiae_C368-T10_good_119.960
SRR6049665Rhizomagastrodiae_C368-T10_good_119.960
SRP279888GastroGastrodia elata tuber 24.18
JuvenJuvenile tuber28.43
Mother_GastroMother tuber of Gastrodia elata 63.96
Mother_JuvenMother tuber of Juvenile 64.63