Detail information of GWHGAAEX006717/evm.TU.scaffold_19.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|145588193|ref|YP_001154790.1| | 1.00E-09 | nuclear protein SET [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] |
| KOG | KOG1080 | 0 | Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases |
| nr | gi|672173311|ref|XP_008806784.1| | 0 | PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Phoenix dactylifera] |
| Swissprot | tr|O23372|ATXR3_ARATH | 0 | Probable histone-lysine N-methyltransferase ATXR3 |
| trEMBL | tr|M0RTE3|M0RTE3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P18630_001} |
| TAIR | AT4G15180 | 0 | SET domain protein 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 875509 | 905831 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006717
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00856.27 | SET | 1886 | 1941 | 1.40E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K22748 | ATXR3, SDG2 | Metabolic pathways | map01100 |
| Lysine degradation | map00310 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 56.820 |
| SRR2545915 | Juvenile tuber | 28.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.820 |
| SRR5643514 | five period of Gastrodia elata | 17.640 | |
| SRR5643515 | five period of Gastrodia elata | 17.390 | |
| SRR5643524 | five period of Gastrodia elata | 16.760 | |
| SRR5643525 | five period of Gastrodia elata | 24.410 | |
| SRR5643528 | five period of Gastrodia elata | 17.140 | |
| SRR5643658 | five period of Gastrodia elata | 20.040 | |
| SRR5643659 | five period of Gastrodia elata | 17.980 | |
| SRR5643660 | five period of Gastrodia elata | 20.830 | |
| SRR5643661 | five period of Gastrodia elata | 16.300 | |
| SRR5643662 | five period of Gastrodia elata | 15.900 | |
| SRR5643663 | five period of Gastrodia elata | 17.230 | |
| SRR5643664 | five period of Gastrodia elata | 18.940 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.500 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 18.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.120 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.14 |
| Juven | Juvenile tuber | 24.59 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 28.29 | |
| Mother_Juven | Mother tuber of Juvenile | 41.00 |