Detail information of GWHGAAEX006718/evm.TU.scaffold_19.28


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|194334049|ref|YP_002015909.1|8.00E-14RNP-1 like RNA-binding protein [Prosthecochloris aestuarii DSM 271]
KOGKOG01186.00E-49FOG: RRM domain
nrgi|115474735|ref|NP_001060964.1|4.38E-59Os08g0139000 [Oryza sativa Japonica Group]
Swissprottr|Q9LIS2|RBG4_ARATH5.00E-17Glycine-rich RNA-binding protein 4, mitochondrial (Precursor)
trEMBLtr|I1QFI4|I1QFI4_ORYGL2.00E-59Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA08G0018500.1}
TAIRAT5G545806.00E-49RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000020929188954973-
Transcript Sequence

Network for GWHGAAEX006718

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1391054.30E-17
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms265.140
SRR2545915Juvenile tuber239.320
SRP108465SRR5643513five period of Gastrodia elata236.070
SRR5643514five period of Gastrodia elata174.500
SRR5643515five period of Gastrodia elata185.990
SRR5643524five period of Gastrodia elata162.520
SRR5643525five period of Gastrodia elata94.710
SRR5643528five period of Gastrodia elata84.100
SRR5643658five period of Gastrodia elata66.790
SRR5643659five period of Gastrodia elata392.600
SRR5643660five period of Gastrodia elata427.710
SRR5643661five period of Gastrodia elata409.440
SRR5643662five period of Gastrodia elata384.770
SRR5643663five period of Gastrodia elata376.730
SRR5643664five period of Gastrodia elata441.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1244.010
SRR6049655Rhizomagastrodiae_C368-T10_good_1399.790
SRR6049656Rhizomagastrodiae_C368-T07_good_1231.890
SRR6049657Rhizomagastrodiae_C368-T07_good_1253.380
SRR6049658Rhizomagastrodiae_C368-T04_good_1249.300
SRR6049659Rhizomagastrodiae_C368-T04_good_1278.890
SRR6049660Rhizomagastrodiae_C368-T01_good_1252.520
SRR6049661Rhizomagastrodiae_C368-T04_good_1257.570
SRR6049662Rhizomagastrodiae_C368-T01_good_1220.480
SRR6049663Rhizomagastrodiae_C368-T01_good_1253.810
SRR6049664Rhizomagastrodiae_C368-T10_good_1237.350
SRR6049665Rhizomagastrodiae_C368-T10_good_1237.350
SRP279888GastroGastrodia elata tuber 362.66
JuvenJuvenile tuber364.72
Mother_GastroMother tuber of Gastrodia elata 94.78
Mother_JuvenMother tuber of Juvenile 203.91