Detail information of GWHGAAEX006719/evm.TU.scaffold_19.30
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|302670881|ref|YP_003830841.1| | 4.00E-12 | endo-1,3(4)-beta-glucanase [Butyrivibrio proteoclasticus B316] |
| nr | gi|743886345|ref|XP_010910122.1| | 1.27E-147 | PREDICTED: LOW QUALITY PROTEIN: xyloglucan endotransglucosylase/hydrolase protein 9-like [Elaeis guineensis] |
| Swissprot | tr|Q8LDW9|XTH9_ARATH | 6.00E-126 | Xyloglucan endotransglucosylase/hydrolase protein 9 (Precursor) |
| trEMBL | tr|I0IK75|I0IK75_9MYRT | 5.00E-138 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} (Fragment) |
| TAIR | AT4G03210 | 2.00E-125 | xyloglucan endotransglucosylase/hydrolase 9 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 995022 | 996082 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006719
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00722.20 | Glyco_hydro_16 | 34 | 236 | 1.40E-55 |
| PF06955.11 | XET_C | 277 | 323 | 1.80E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0010411 | Biological Process | xyloglucan metabolic process |
| GO:0006073 | Biological Process | cellular glucan metabolic process |
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0042546 | Biological Process | cell wall biogenesis |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0016762 | Molecular Function | xyloglucan:xyloglucosyl transferase activity |
| GO:0005618 | Cellular Component | cell wall |
| GO:0048046 | Cellular Component | apoplast |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 228.250 |
| SRR2545915 | Juvenile tuber | 194.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 38.270 |
| SRR5643514 | five period of Gastrodia elata | 52.520 | |
| SRR5643515 | five period of Gastrodia elata | 69.070 | |
| SRR5643524 | five period of Gastrodia elata | 28.370 | |
| SRR5643525 | five period of Gastrodia elata | 176.400 | |
| SRR5643528 | five period of Gastrodia elata | 75.540 | |
| SRR5643658 | five period of Gastrodia elata | 243.810 | |
| SRR5643659 | five period of Gastrodia elata | 259.200 | |
| SRR5643660 | five period of Gastrodia elata | 307.450 | |
| SRR5643661 | five period of Gastrodia elata | 280.890 | |
| SRR5643662 | five period of Gastrodia elata | 143.780 | |
| SRR5643663 | five period of Gastrodia elata | 174.720 | |
| SRR5643664 | five period of Gastrodia elata | 281.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 97.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 81.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 101.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 53.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 52.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 108.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 84.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 107.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 90.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 182.02 |
| Juven | Juvenile tuber | 21.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 107.35 | |
| Mother_Juven | Mother tuber of Juvenile | 56.43 |