Detail information of GWHGAAEX006730/evm.TU.scaffold_19.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|386714222|ref|YP_006180545.1| | 2.00E-68 | MFS-type transporter [Halobacillus halophilus DSM 2266] |
| KOG | KOG0254 | 0 | Predicted transporter (major facilitator superfamily) |
| nr | gi|672184756|ref|XP_008812644.1| | 0 | PREDICTED: sugar carrier protein C-like [Phoenix dactylifera] |
| Swissprot | tr|P23586|STP1_ARATH | 0 | Sugar transport protein 1 |
| trEMBL | tr|M0U362|M0U362_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P24550_001} |
| TAIR | AT1G11260 | 0 | sugar transporter 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 1261902 | 1263611 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006730
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 28 | 487 | 4.40E-123 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.140 |
| SRR2545915 | Juvenile tuber | 0.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.380 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.220 | |
| SRR5643524 | five period of Gastrodia elata | 0.120 | |
| SRR5643525 | five period of Gastrodia elata | 0.540 | |
| SRR5643528 | five period of Gastrodia elata | 0.140 | |
| SRR5643658 | five period of Gastrodia elata | 0.460 | |
| SRR5643659 | five period of Gastrodia elata | 0.270 | |
| SRR5643660 | five period of Gastrodia elata | 0.170 | |
| SRR5643661 | five period of Gastrodia elata | 0.170 | |
| SRR5643662 | five period of Gastrodia elata | 0.170 | |
| SRR5643663 | five period of Gastrodia elata | 0.030 | |
| SRR5643664 | five period of Gastrodia elata | 0.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.070 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.160 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.320 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.030 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.030 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.28 |
| Juven | Juvenile tuber | 0.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.55 | |
| Mother_Juven | Mother tuber of Juvenile | 0.27 |