Gene detail

Detail information of GWHGAAEX006741/evm.TU.scaffold_19.55

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0963	Transcription factor/CCAAT displacement protein CDP1
nr	gi\|672114047\|ref\|XP_008775135.1\|	PREDICTED: protein CASP-like [Phoenix dactylifera]
Swissprot	tr\|Q9LS42\|CASP_ARATH	Protein CASP
trEMBL	tr\|M0S250\|M0S250_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P22420_001}
TAIR	AT3G18480	CCAAT-displacement protein alternatively spliced product

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	1373781	1427118	-

Transcript Sequence
>GWHTAAEX006741 GGGACACTCTGTATTTCTCAGCCCTTCATATTCATTTTTTTGGAGAGCAAAAAATAGACTACGGAGAGGAAGGACAATCGCAGTCCAGCAGTTCGAGCGCTGCTCCCTCGTTGCGATGGAGCCGAGCCATACGGGATCTGAGAGAGACAAAGCAGCCACATCGTCCCCCATTGCCGTCGTTTCCAGCTTCTGGAGAGATTTTAACTTGGAAAAAGAAAGAAGTGGTCTTGATGAACAGGGACTCAAGATTGCTGAAAATCAAGAGATTAGTCAAAAGAACAGACGGAAACTTGCTGAGAACACTCGTGATTTTAAGAAGGAATCATCAGAGGAAAAACTCAACTTGTTTAGCTCCTTGTTAAAGAGCTATCAGGAAGAAGTTGATAATCTCACAAAAAGAGCAAAATTTGGAGAAAATGCTTTTCTTAACATCTATCAGAAACTTTATGAGGCTCCAGATCCTTATCCGGCTGTTGCTTCAATTGCAGAGCAAGAGCAAAGATTATCAGATCTTGAATCTGAGAACCGTAAAATGAAGCTTGAATTAGAAGAATATAGAACTGAAGCAACACATTTAAAGAACCAACAAGCTACAATAAGACGATTAGAAGAACGGAACCGACAACTAGAGCAGCAGATGGAAGAGAAGGTCAGGGAGATTGTTGAGATTCGACAGCGAAGCATGGCTGAAGACAACCAAAAAACTTTGGAGGTTCTGAAAGAAAGGGAACAGTTATTACAAGAACAACTGCGACAAGCTAAGGAAAGTGTTACTAATATGCAGAAAATACATGAATTTGCACAAAGTCAGCTATTTGAACTTCGTGCTCAGTCTGAGGAAGAAAGAGCAGCAAAGCAAGCAGAACTTGATCTACTCATGGATGAAGTTGAACGAGCTCAAACAAGGCTTAGAAGTATTGAAAGAGAAAAGGGAGCTTTGCGTTCTCAGTTGCAGTCCGTTAATGAAGATAGTGTAAGCAAACAAAGTGACTATATAGATTCAAGCAAAGTTCTTGAGAATCCCTTAAATGCAAAGGAGAAGATGATATCTGATCTGAATATGGAACTTCATAAAATGGAAACCACTATGTCAATTGAACGAGAGCAGCACATGAGCGAGATCAAGAAGTTGAATTTCTTGCTCAATGAAAAGGAAGCCATCCTCATGGAAATCAAGAAAGAATTGCATGAAAGGCCAACTGCAAAAGTTGTTAAAGATCTGCGTAAACAAATAAAAATCTTGCAGGCTGTTGGGTACAATTCCATTGAGGCTGAAGATTGGGAACTAGCTACTGAGGGGCAAGAGATGAGCAAGATGGAGATGCTGCTTCTTGACAAGAACCGGAAAATGGAGCATGAATTGACACAATTGAAGGTCAGAATTTCAGAGAAGTCAAGCTTACTAGAAGTTAGAGAATCAAAGATTGCAGAGCTGAATGATAAGGTTAATGAGCAACAAAAGTTGATTTCAAAACTTGAAGATGACATTTTAAAGGGTTACAAATCATCTGATCGGAAAGGATCATTCTTAAATGATTGGGATATGAATGAGACTGGTGCTAATGAAATATTTGAGAGCACGAATACCAGGCATGCGTCCTCTGATCAAGATCAAAGTTCAATGCTGAAGGTAATTTGCAACCAGCGTGATCGTTTTAGAACACGGCTACGTGAAGCTGAAGAGGAAGTGAGGCTTTTAAAAGAGAAGATAAGCTTTCTGATGGATGAGCTGGAAAAATCCAAAGCTGACAATGTGAAATTGTATGGGAAGATCCGTTACGTACAAGATTATAGTCAAGAAAATCTTGTCTCAAGAGGCCCAAAGAAGTATGCTGAGGACGTGGAAAGTGGTTTCAGCTCAGATGTAGAATCAAAGTATAAGAAGATGTATGAGGATGACATTAATCCTTTCACTGCTTTCTCAAAGAAGGAAAGAGATCAAAGGTATCGAGAGCTTGGTATTAGAGACAAGATCACACTAACAAGTGGCCGTTTTCTCCTAAGCAACAAGTATGCCCGAACGTTCGTGTTCTTTTATTCCATCGGACTGCACCTGCTCGTCTTCGCATGCCTTTACAGAATGTCGTCTTTGAGCTATATAAGGACGCATGCCGGCGAGGAAGCCATTCTTCAAGCTGGGAATCAGACACTTCTGCCTCACGCTTCAAAGCAAGAGTAATACGTGAAATTTTTTAGAGATATAAATGCAGTCAGTCATGGCGGCCATTGCAAGCCTTGATTAGCTCAAATTTCTCTGCAAATCTAAAGAAATTATATGCTGTATATATCTATATACATGCATATACATAGGAATGCTGGTTTATCATTTTTTTTGTTTGAAATGATAAAGAACTCATTTACTGCTCATACAGTGTTGCTGTTTCATTTCATTTAAATAAACATACATATTTCTTTTCTTACATTTTGAATATATTTAGTAAATTTTCACATTAATTTTATATTTGTATTTTGAGCTCAAACTTGAAGTCAATGTAAATGCATAA

Network for GWHGAAEX006741

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08172.11	CASP_C	434	659	2.90E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006891	Biological Process	intra-Golgi vesicle-mediated transport
GO:0030173	Cellular Component	integral component of Golgi membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.700
SRP064423	SRR2545915	Juvenile tuber	40.890
SRP108465	SRR5643513	five period of Gastrodia elata	16.940
	SRR5643514	five period of Gastrodia elata	19.100
	SRR5643515	five period of Gastrodia elata	14.770
	SRR5643524	five period of Gastrodia elata	15.130
	SRR5643525	five period of Gastrodia elata	16.980
	SRR5643528	five period of Gastrodia elata	13.800
	SRR5643658	five period of Gastrodia elata	19.860
	SRR5643659	five period of Gastrodia elata	19.740
	SRR5643660	five period of Gastrodia elata	25.030
	SRR5643661	five period of Gastrodia elata	20.510
	SRR5643662	five period of Gastrodia elata	20.790
	SRR5643663	five period of Gastrodia elata	22.140
	SRR5643664	five period of Gastrodia elata	21.690
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.370
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	20.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.450
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.590
SRP279888	Gastro	Gastrodia elata tuber	24.28
	Juven	Juvenile tuber	22.26
	Mother_Gastro	Mother tuber of Gastrodia elata	16.67
	Mother_Juven	Mother tuber of Juvenile	23.44