Gene detail

Detail information of GWHGAAEX006742/evm.TU.scaffold_19.56_evm.TU.scaffold_19.57

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2027	5.00E-48	Spindle pole body protein
nr	gi\|672114030\|ref\|XP_008775064.1\|	1.78E-79	PREDICTED: uncharacterized protein LOC103695492 [Phoenix dactylifera]
trEMBL	tr\|M0RHA5\|M0RHA5_MUSAM	8.00E-74	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P11290_001}
TAIR	AT1G13340	5.00E-48	Regulator of Vps4 activity in the MVB pathway protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	1447729	1476386	-

Transcript Sequence
>GWHTAAEX006742 GTGGGATTATGGGAAAGGGGAGCTGTCTGGAATCGCTCTTCGGGGGGAGGAAATCGAGGCAAGTGTCGAAGCTGAAAGGGCTGCTGGCGCTAACTGTGAGCCGCATTTCCGTCCTCCGCCACCAGCGGCGATCCCGCTGCGCGCAGGCCCAAGCTGACGTCGCCCACCTCCTCCTCGTCGGCCACCAGGACCGCGCCCTCCTCCGCGCGGAGATGGTCATCAGAGAGAGCAACATGCTCGACGTCCTCGCCATTTTGGAGACCTACTGTCACCTGATCGCCGAGCGCGCCTTTCTCCTCCACAGCCACGCGGAGTGCCCCGATGAGCTGCGAGAGGCCGCCGCCGGCCTCGCCTTCGCCGCTTCGCGATGCGGGGAGTTGCCGGAGCTGAGGGATGTCCGCCGCATCTTCTCCTCCCGATTTGGCAAGGAATTTGTCGCTGCTGCCATCGAATTGCGCAACAATTGTGGAGTCAGCAGCAAGATGGTGCAGAAGTTCTCCACAAGGCAACCAAGCCTAGAAAATAGGGCTAAAGTCATAAAAGAGATTGCAATTGAGAAAGGCATCAAGTTGAAACTTGTCGAACGTACTCTGGAAACTGTAGAGATAAAGAACCAAGCTAAGAAATCAGTGAAGCTGCCATACACTGCCACATGTGATATTCAAGAATTTCTTTGCGAAGAAAATCTAGAAATACAGTCTCAGGATAAGTACAAGGATGCTGGGAGTGCAGCTCTTGCCGCCTTCAAGTCAGCAACATATGCTGCAGCTGCTGCAAAGGCGGCAGTCGAGCTCTTACAGTCAGAGACAAATGGAAAAGATTACAGTAATCCCGGCAAGCCAAAACATTACATTCATAAAGATTTATGTTGCAGTTCCGTAGACCTTGGTTGCAGAACGTGTAAGGTGAGTTCTTGCGGAGACGGCTTGGAAAGGCCGAGGGACAAAGAAATTAAAAATGATGAGATTGATGAGATTGATGATGACGAGGAATTGGCGAGGCTTGCTTCAGAAATTTTGAGGAGAACTCACAGTTTTTCAGGAATGAAAGGGAATAATGATTTGAAAGCTGAAAGTCAGTTTGATGCTGATAAAGATGATTGTTTTAGCTATGGGGATGAAGAACAGGACAAGTTGGCAATCATAGCAGTGGAAGCGCCAAAGAATTGTAATCCTGTGAGATTTCAGTCTGAGAAAAGGGTGCAGACTAAGAACAATGTTCACAAAGTTCCTGGAGAAAATTTGGTCGCGCCAATTTCTTTATTTAAGGCGAGTTCCTTCTCTGTGAGGACTCGCAGGTGATTAGCAAAGGAAGAATTTGGGTTGGGATATTTTGATTCAAGATTGCATAGGGGTGATTTTGTATTCGTTAGATTACCTTTGAGATTAACACAATACATAGAAGTGCTAATCTCAAATCCAATCTGACAATTGTAAAACCCATTTGATGCATTTTGGACCAAATTATCCAAAAGCAGCTTTCTCCATAGAGTTAAGCTTTCTTGTAGATTCTTATCATGCTCATCTATTGGGTATGAAGTTGGTTAATAATATATGTGAATTGAGATAAGTTGTTCCATGAGATTATGTTATAGTATATTATCTTATATTATGTTGTGCTCATTTCTTACCTGAGAACCATACGAAGAGAAGAATATATCTTGTATTCAGGACAGCATAGATGTGTTAATAAATGTAGTAATTATCGTTAAGG

Network for GWHGAAEX006742

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03398.13	Ist1	24	186	5.20E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19476	IST1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0015031	Biological Process	protein transport

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	57.790
SRP064423	SRR2545915	Juvenile tuber	50.260
SRP108465	SRR5643513	five period of Gastrodia elata	40.910
	SRR5643514	five period of Gastrodia elata	35.670
	SRR5643515	five period of Gastrodia elata	32.190
	SRR5643524	five period of Gastrodia elata	32.550
	SRR5643525	five period of Gastrodia elata	23.940
	SRR5643528	five period of Gastrodia elata	34.310
	SRR5643658	five period of Gastrodia elata	23.260
	SRR5643659	five period of Gastrodia elata	24.870
	SRR5643660	five period of Gastrodia elata	21.120
	SRR5643661	five period of Gastrodia elata	21.440
	SRR5643662	five period of Gastrodia elata	16.290
	SRR5643663	five period of Gastrodia elata	24.340
	SRR5643664	five period of Gastrodia elata	18.450
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	38.780
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	29.740
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.930
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	53.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	53.120
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	40.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	41.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.000
SRP279888	Gastro	Gastrodia elata tuber	29.62
	Juven	Juvenile tuber	34.67
	Mother_Gastro	Mother tuber of Gastrodia elata	79.20
	Mother_Juven	Mother tuber of Juvenile	63.16