Detail information of GWHGAAEX006746/evm.TU.scaffold_19.61
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|695057431|ref|XP_009416987.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At2g01510 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9S7F4|PP206_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At2g01510 |
| trEMBL | tr|F6H432|F6H432_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB46975.1} |
| TAIR | AT3G02010 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 1499750 | 1501942 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006746
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 44 | 69 | 0.29 |
| PF01535.19 | PPR | 73 | 95 | 5.80E-05 |
| PF01535.19 | PPR | 103 | 133 | 5.60E-08 |
| PF13041.5 | PPR_2 | 201 | 245 | 1.10E-11 |
| PF01535.19 | PPR | 277 | 302 | 0.0053 |
| PF01535.19 | PPR | 305 | 332 | 7.60E-05 |
| PF01535.19 | PPR | 378 | 397 | 0.82 |
| PF13041.5 | PPR_2 | 404 | 449 | 4.60E-10 |
| PF13041.5 | PPR_2 | 504 | 552 | 2.50E-14 |
| PF01535.19 | PPR | 641 | 669 | 0.29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.970 |
| SRR2545915 | Juvenile tuber | 1.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.770 |
| SRR5643514 | five period of Gastrodia elata | 3.050 | |
| SRR5643515 | five period of Gastrodia elata | 2.020 | |
| SRR5643524 | five period of Gastrodia elata | 3.280 | |
| SRR5643525 | five period of Gastrodia elata | 1.430 | |
| SRR5643528 | five period of Gastrodia elata | 1.430 | |
| SRR5643658 | five period of Gastrodia elata | 1.890 | |
| SRR5643659 | five period of Gastrodia elata | 2.470 | |
| SRR5643660 | five period of Gastrodia elata | 3.230 | |
| SRR5643661 | five period of Gastrodia elata | 3.030 | |
| SRR5643662 | five period of Gastrodia elata | 2.400 | |
| SRR5643663 | five period of Gastrodia elata | 2.540 | |
| SRR5643664 | five period of Gastrodia elata | 2.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.560 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.31 |
| Juven | Juvenile tuber | 3.38 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.49 | |
| Mother_Juven | Mother tuber of Juvenile | 1.09 |