Detail information of GWHGAAEX006755/evm.TU.scaffold_19.70


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16093.00E-90Protein involved in mRNA turnover and stability
nrgi|743803482|ref|XP_010926931.1|0PREDICTED: uncharacterized protein LOC105049083 [Elaeis guineensis]
Swissprottr|F4JKK0|SUD1_ARATH3.00E-06Probable E3 ubiquitin ligase SUD1
trEMBLtr|M0SUI3|M0SUI3_MUSAM4.00E-178Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P00540_001}
TAIRAT5G031803.00E-90RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002018632201887531-
Transcript Sequence

Network for GWHGAAEX006755

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12906.6RINGv2272746.20E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms44.610
SRR2545915Juvenile tuber42.760
SRP108465SRR5643513five period of Gastrodia elata28.830
SRR5643514five period of Gastrodia elata29.980
SRR5643515five period of Gastrodia elata33.590
SRR5643524five period of Gastrodia elata34.860
SRR5643525five period of Gastrodia elata74.690
SRR5643528five period of Gastrodia elata48.950
SRR5643658five period of Gastrodia elata76.360
SRR5643659five period of Gastrodia elata47.810
SRR5643660five period of Gastrodia elata64.960
SRR5643661five period of Gastrodia elata50.240
SRR5643662five period of Gastrodia elata59.740
SRR5643663five period of Gastrodia elata64.990
SRR5643664five period of Gastrodia elata65.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_127.410
SRR6049655Rhizomagastrodiae_C368-T10_good_125.390
SRR6049656Rhizomagastrodiae_C368-T07_good_126.410
SRR6049657Rhizomagastrodiae_C368-T07_good_127.750
SRR6049658Rhizomagastrodiae_C368-T04_good_127.030
SRR6049659Rhizomagastrodiae_C368-T04_good_130.640
SRR6049660Rhizomagastrodiae_C368-T01_good_127.470
SRR6049661Rhizomagastrodiae_C368-T04_good_125.030
SRR6049662Rhizomagastrodiae_C368-T01_good_121.440
SRR6049663Rhizomagastrodiae_C368-T01_good_126.690
SRR6049664Rhizomagastrodiae_C368-T10_good_120.860
SRR6049665Rhizomagastrodiae_C368-T10_good_120.860
SRP279888GastroGastrodia elata tuber 87.85
JuvenJuvenile tuber44.94
Mother_GastroMother tuber of Gastrodia elata 34.84
Mother_JuvenMother tuber of Juvenile 25.37