Detail information of GWHGAAEX006757/evm.TU.scaffold_19.72


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|307152127|ref|YP_003887511.1|2.00E-67ribosome recycling factor [Cyanothece sp. PCC 7822]
KOGKOG47595.00E-92Ribosome recycling factor
nrgi|720000338|ref|XP_010255993.1|1.13E-115PREDICTED: ribosome-recycling factor, chloroplastic [Nelumbo nucifera]
Swissprottr|A3BLC3|RRFC_ORYSJ1.00E-106Ribosome-recycling factor, chloroplastic (Precursor)
trEMBLtr|B9GSN2|B9GSN2_POPTR5.00E-110Ribosome recycling factor family protein {ECO:0000313|EMBL:EEE81385.2}
TAIRAT3G631905.00E-92ribosome recycling factor, chloroplast precursor

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002019106031977989+
Transcript Sequence

Network for GWHGAAEX006757

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01765.18RRF1382981.80E-57
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.760
SRR2545915Juvenile tuber22.110
SRP108465SRR5643513five period of Gastrodia elata13.390
SRR5643514five period of Gastrodia elata15.710
SRR5643515five period of Gastrodia elata13.950
SRR5643524five period of Gastrodia elata13.590
SRR5643525five period of Gastrodia elata11.210
SRR5643528five period of Gastrodia elata10.480
SRR5643658five period of Gastrodia elata7.430
SRR5643659five period of Gastrodia elata11.440
SRR5643660five period of Gastrodia elata14.740
SRR5643661five period of Gastrodia elata15.360
SRR5643662five period of Gastrodia elata14.640
SRR5643663five period of Gastrodia elata15.270
SRR5643664five period of Gastrodia elata12.920
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.850
SRR6049655Rhizomagastrodiae_C368-T10_good_115.220
SRR6049656Rhizomagastrodiae_C368-T07_good_115.690
SRR6049657Rhizomagastrodiae_C368-T07_good_116.550
SRR6049658Rhizomagastrodiae_C368-T04_good_118.290
SRR6049659Rhizomagastrodiae_C368-T04_good_118.060
SRR6049660Rhizomagastrodiae_C368-T01_good_114.450
SRR6049661Rhizomagastrodiae_C368-T04_good_117.030
SRR6049662Rhizomagastrodiae_C368-T01_good_116.300
SRR6049663Rhizomagastrodiae_C368-T01_good_114.610
SRR6049664Rhizomagastrodiae_C368-T10_good_117.750
SRR6049665Rhizomagastrodiae_C368-T10_good_117.750
SRP279888GastroGastrodia elata tuber 22.48
JuvenJuvenile tuber10.98
Mother_GastroMother tuber of Gastrodia elata 10.53
Mother_JuvenMother tuber of Juvenile 10.10