Gene detail

Detail information of GWHGAAEX006764/evm.TU.scaffold_19.80

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|170781032\|ref\|YP_001709364.1\|	1.00E-111	peptidase [Clavibacter michiganensis subsp. sepedonicus]
nr	gi\|695066297\|ref\|XP_009380035.1\|	0	PREDICTED: subtilisin-like protease [Musa acuminata subsp. malaccensis]
Swissprot	tr\|O65351\|SUBL_ARATH	0	Subtilisin-like protease (Precursor)
trEMBL	tr\|M5VVP9\|M5VVP9_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ05462.1}
TAIR	AT2G05920	0	Subtilase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	2111466	2113736	-

Transcript Sequence
>GWHTAAEX006764 ATGGCGCTTCTCCTCGTCGTCTCCTTCATCGCCCTCCTTCTTTCAACCGACCAGGTATTTGTTCATGGCAACAGAACCTACATAGTCTACATGAACCCTGCCCACAAACCCTCTGTCTACCCAACCAACGCTCACTGGTACTCCTCCCACCTGGCTTCCCTCTCCATTGACCCCTCCCTCCACCTTCTCTACTCCTACTCAGAAGCCCTACACGGCTTTGCCGCCTCCTCCCTTCTTCCCTACCACATCCGCAGCCTCCGCCGCTCCCCCGCCGTTCTTTACCTCCACCCCGACCCCTTCCTCCGCCTCCACACCACGCGCACTCCCTTCTTCCTCGGCCTCTCCCCGTCCTCCCCTTCCTCCCCTTTCCGCTCAGCCGACGCCTCCTCCGGATCCGTCGTCCTCGGTGTCCTCGACACTGGCATCTGGCCGGAATCCCCTTCTTTCTTTCCCGACCCCTCCCTCCCCCCAGCGCCGTCTCGCTGGCGCGGCCTCTGCGAACCAGGCGTTGACTTCTCCCCCTCCCTCTGCAACCGCAAACTCATCGGCGCCCGTTCCTTCTCCCGCGGCTTCCTAGCCGCCCCCGGCAATCCCTCTCCGGAATACGAGTCTCCGAGGGACCGCGATGGCCACGGCACCCACACTGCCTCCACTGCTGCCGGGGCCTTCGCCCCCAACGCCAGCCTTTTCGGATACGCCGGTGGCACCGCTCGAGGCATGGCCACCTCCGCTCGCATCGCCGCCTACAAGGTCTGCTGGGCCTCTGGCTGCTTCGGCTCCGACATTCTCGCTGCCATGGACCGCGCCATCTCCGACGGCGTTGATGTCCTCTCCCTCTCCCTCGGCGGAGGCGCCTCCCCTTTGTTCAGGGACACCATTGCCATTGGAGCCTTCGCTGCCACCGAGCGCGGGATCTTCGTCGCCTGCTCTGCAGGCAACAGCGGCCCGGCCAAGGGAAGTGTCACTAATGCTGCCCCTTGGATTGCCACCGTAGGCGCAGGCACCATCGACCGCGATTTCCCAGCTTTCGCTTTCCTCGGGTCCGGCGAAAGCTTGCTCGGTGTGTCTCTCTACAGCGGGGAAGGCATGGGTGACGCCCTCGTCCCGCTCCTCTACGACGCCCGTAGCAATGCCAGTCGCATGTGCCTTGTCGGCACCCTGGATCCCGCAAAAGTGAGGGGGAGAGTGGTGCTCTGCGACCGCGGTGTGAGCGCACGAGTAGAGAAGGGAGCTGTCGTCCGAGAAGCCGGTGGCGTCGGCATGATTCTCGCCAATACCGCTTCCAGCGGAGAAGAGCTCGTCGCAGACAGCCACCTCCTTCCCGCGATTTCCGTCGGCAGGATCGCCGGAGATAAAATTAGGAGATACATATTCTCAAATCGAGAACCGAAGGCAGTGCTCCGATTCAACGGAACGGTCGTCGGCGTTCGCCCTTCGCCGGTGGTGGCAGCATTTAGCTCTCGTGGGCCGAACCCTGTCGCTGCGGAAATTCTGAAGCCGGACATGATCGGCCCTGGGGTCAACATACTCGCAGGATGGTCAGGCTCCACGGGGCCGACTGGCATGACCAAAGATGGAAGGAGAACGCAGTTCAATATACTTTCGGGGACCTCTATGTCTTGCCCTCATATCAGCGGCCTGGCGGCACTCCTCAAGGCGGCTCATCCTGAGTGGAGCCCTGCGGCGATCAAATCGGCGCTGATGACAACGGCCTATGCTCGTGACAACACCGGGAACCATGTCAGAGATGCTGCCGGCGGCGGGCTGGCTACGCCATTCTCGTACGGCGCTGGACACGTTGACCCGCAGAAGGCTCTAGAGCCGGGCTTAGTATACGACATCACTACGGATGAGTACATTGCATTTCTGTGCTTGCTGAATTACACGCTCCCGCGCATCCAGGTGATCACGAAGAGGGAAAGAGTCAGCTGCTCGCACCAGCTGAAGAGCCCTGGCGATCTCAATTACCCTTCTTTCTCTGTGGTGTTCGCGGGAAAGGCGAAGGCGGTGACATACAGACGAGAGTTGACCAACGTGGGCGCAGCGGGGATAGTTTACGAGGCGAGCGTCGGCGGTTCGGCGAGCGTCGGTGTGAGCGTGAGGCCGTCTAGGCTTTTCTTCGGAGAGGTGGGGCAGAAAATCAAGTATGATGTGACCTTCGTGTCCAGAAGGGGTGCGAGGCCGCCGCCAGCGACAGCATTCGGGTGGCTGACGTGGAGCAATAAGCAGCACAAAGTGCGGAGTCCGATTGCCTACACCTGGAAGATCTGA

Network for GWHGAAEX006764

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05922.15	Inhibitor_I9	26	104	5.40E-07
PF00082.21	Peptidase_S8	133	580	1.30E-43
PF02225.21	PA	379	453	8.40E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	Biological Process	proteolysis
GO:0004252	Molecular Function	serine-type endopeptidase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.170
SRP064423	SRR2545915	Juvenile tuber	1.130
SRP108465	SRR5643513	five period of Gastrodia elata	4.100
	SRR5643514	five period of Gastrodia elata	5.450
	SRR5643515	five period of Gastrodia elata	3.410
	SRR5643524	five period of Gastrodia elata	3.440
	SRR5643525	five period of Gastrodia elata	8.660
	SRR5643528	five period of Gastrodia elata	2.620
	SRR5643658	five period of Gastrodia elata	10.090
	SRR5643659	five period of Gastrodia elata	12.710
	SRR5643660	five period of Gastrodia elata	4.840
	SRR5643661	five period of Gastrodia elata	6.670
	SRR5643662	five period of Gastrodia elata	1.210
	SRR5643663	five period of Gastrodia elata	4.710
	SRR5643664	five period of Gastrodia elata	2.150
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.450
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	12.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.200
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.510
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.090
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.950
SRP279888	Gastro	Gastrodia elata tuber	2.97
	Juven	Juvenile tuber	4.38
	Mother_Gastro	Mother tuber of Gastrodia elata	0.38
	Mother_Juven	Mother tuber of Juvenile	0.96