Detail information of GWHGAAEX006766/evm.TU.scaffold_19.83_evm.TU.scaffold_19.84
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743840669|ref|XP_010937328.1| | 0 | PREDICTED: probable lipoxygenase 6 [Elaeis guineensis] |
| Swissprot | tr|Q8H016|LOX6_ORYSJ | 0 | Probable lipoxygenase 6 |
| trEMBL | tr|I1P867|I1P867_ORYGL | 0 | Lipoxygenase {ECO:0000256|RuleBase:RU003975} |
| TAIR | AT1G17420 | 0 | lipoxygenase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 2133420 | 2141484 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006766
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01477.22 | PLAT | 153 | 214 | 2.20E-06 |
| PF00305.18 | Lipoxygenase | 227 | 890 | 1.30E-280 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00454 | LOX2S | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Linoleic acid metabolism | map00591 | ||
| alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0005515 | Molecular Function | protein binding |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0016702 | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.440 |
| SRR2545915 | Juvenile tuber | 34.690 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 34.580 |
| SRR5643514 | five period of Gastrodia elata | 36.010 | |
| SRR5643515 | five period of Gastrodia elata | 31.490 | |
| SRR5643524 | five period of Gastrodia elata | 28.980 | |
| SRR5643525 | five period of Gastrodia elata | 11.870 | |
| SRR5643528 | five period of Gastrodia elata | 4.950 | |
| SRR5643658 | five period of Gastrodia elata | 13.550 | |
| SRR5643659 | five period of Gastrodia elata | 63.270 | |
| SRR5643660 | five period of Gastrodia elata | 65.590 | |
| SRR5643661 | five period of Gastrodia elata | 62.630 | |
| SRR5643662 | five period of Gastrodia elata | 41.060 | |
| SRR5643663 | five period of Gastrodia elata | 53.100 | |
| SRR5643664 | five period of Gastrodia elata | 56.990 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 52.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 54.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 47.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 46.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 40.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 47.570 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 49.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 53.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 47.150 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 43.98 |
| Juven | Juvenile tuber | 55.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.97 | |
| Mother_Juven | Mother tuber of Juvenile | 22.02 |