Detail information of GWHGAAEX006771/evm.TU.scaffold_19.89


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17824.00E-45Small Nuclear ribonucleoprotein splicing factor
nrgi|720057041|ref|XP_010273859.1|6.86E-49PREDICTED: U6 snRNA-associated Sm-like protein LSm1 [Nelumbo nucifera]
Swissprottr|Q8LFL8|LSM1B_ARATH9.00E-46Sm-like protein LSM1B {ECO:0000305}
trEMBLtr|V4SS25|V4SS25_9ROSI2.00E-47Uncharacterized protein {ECO:0000313|EMBL:ESR39941.1}
TAIRAT3G140804.00E-45Small nuclear ribonucleoprotein family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002021973842200634+
Transcript Sequence

Network for GWHGAAEX006771

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12620LSM1 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.320
SRR2545915Juvenile tuber24.810
SRP108465SRR5643513five period of Gastrodia elata28.090
SRR5643514five period of Gastrodia elata20.700
SRR5643515five period of Gastrodia elata22.060
SRR5643524five period of Gastrodia elata18.900
SRR5643525five period of Gastrodia elata22.220
SRR5643528five period of Gastrodia elata42.480
SRR5643658five period of Gastrodia elata52.730
SRR5643659five period of Gastrodia elata12.150
SRR5643660five period of Gastrodia elata15.520
SRR5643661five period of Gastrodia elata8.710
SRR5643662five period of Gastrodia elata12.950
SRR5643663five period of Gastrodia elata18.420
SRR5643664five period of Gastrodia elata15.130
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.440
SRR6049655Rhizomagastrodiae_C368-T10_good_116.020
SRR6049656Rhizomagastrodiae_C368-T07_good_120.880
SRR6049657Rhizomagastrodiae_C368-T07_good_116.200
SRR6049658Rhizomagastrodiae_C368-T04_good_116.450
SRR6049659Rhizomagastrodiae_C368-T04_good_113.400
SRR6049660Rhizomagastrodiae_C368-T01_good_116.370
SRR6049661Rhizomagastrodiae_C368-T04_good_120.560
SRR6049662Rhizomagastrodiae_C368-T01_good_124.610
SRR6049663Rhizomagastrodiae_C368-T01_good_119.290
SRR6049664Rhizomagastrodiae_C368-T10_good_126.220
SRR6049665Rhizomagastrodiae_C368-T10_good_126.220
SRP279888GastroGastrodia elata tuber 6.58
JuvenJuvenile tuber3.67
Mother_GastroMother tuber of Gastrodia elata 11.71
Mother_JuvenMother tuber of Juvenile 7.02