Detail information of GWHGAAEX006774/evm.TU.scaffold_19.93
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146295422|ref|YP_001179193.1| | 4.00E-61 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| nr | gi|720057057|ref|XP_010273863.1| | 0 | PREDICTED: probable polygalacturonase [Nelumbo nucifera] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 5.00E-124 | Probable polygalacturonase |
| trEMBL | tr|B9IND1|B9IND1_POPTR | 0 | Glycoside hydrolase family 28 family protein {ECO:0000313|EMBL:EEF03293.1} |
| TAIR | AT1G19170 | 0 | Pectin lyase-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 2235693 | 2271052 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006774
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00295.16 | Glyco_hydro_28 | 164 | 448 | 1.80E-50 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004650 | Molecular Function | polygalacturonase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.870 |
| SRR2545915 | Juvenile tuber | 10.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.990 |
| SRR5643514 | five period of Gastrodia elata | 19.750 | |
| SRR5643515 | five period of Gastrodia elata | 21.530 | |
| SRR5643524 | five period of Gastrodia elata | 20.600 | |
| SRR5643525 | five period of Gastrodia elata | 41.190 | |
| SRR5643528 | five period of Gastrodia elata | 36.740 | |
| SRR5643658 | five period of Gastrodia elata | 52.060 | |
| SRR5643659 | five period of Gastrodia elata | 16.900 | |
| SRR5643660 | five period of Gastrodia elata | 18.860 | |
| SRR5643661 | five period of Gastrodia elata | 19.360 | |
| SRR5643662 | five period of Gastrodia elata | 18.620 | |
| SRR5643663 | five period of Gastrodia elata | 22.860 | |
| SRR5643664 | five period of Gastrodia elata | 18.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.140 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.830 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.330 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.330 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.03 |
| Juven | Juvenile tuber | 19.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.42 | |
| Mother_Juven | Mother tuber of Juvenile | 23.90 |