Detail information of GWHGAAEX006777/evm.TU.scaffold_19.96


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|183222158|ref|YP_001840154.1|4.00E-15RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)']
KOGKOG01180FOG: RRM domain
nrgi|590575096|ref|XP_007012590.1|0Oligouridylate binding protein 1B isoform 1 [Theobroma cacao]
Swissprottr|Q9M427|UBP1_NICPL0Oligouridylate-binding protein 1
trEMBLtr|A0A061GSY2|A0A061GSY2_THECC0Oligouridylate binding protein 1B isoform 1 {ECO:0000313|EMBL:EOY30209.1}
TAIRAT1G173700oligouridylate binding protein 1B

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002023131292331981+
Transcript Sequence

Network for GWHGAAEX006777

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1561224.80E-13
PF00076.21RRM_11412112.90E-19
PF00076.21RRM_12663325.20E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms248.360
SRR2545915Juvenile tuber261.410
SRP108465SRR5643513five period of Gastrodia elata148.750
SRR5643514five period of Gastrodia elata131.350
SRR5643515five period of Gastrodia elata124.080
SRR5643524five period of Gastrodia elata121.290
SRR5643525five period of Gastrodia elata219.400
SRR5643528five period of Gastrodia elata182.630
SRR5643658five period of Gastrodia elata227.400
SRR5643659five period of Gastrodia elata183.810
SRR5643660five period of Gastrodia elata204.810
SRR5643661five period of Gastrodia elata179.630
SRR5643662five period of Gastrodia elata211.190
SRR5643663five period of Gastrodia elata213.470
SRR5643664five period of Gastrodia elata261.870
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1187.510
SRR6049655Rhizomagastrodiae_C368-T10_good_1166.130
SRR6049656Rhizomagastrodiae_C368-T07_good_1162.900
SRR6049657Rhizomagastrodiae_C368-T07_good_1225.970
SRR6049658Rhizomagastrodiae_C368-T04_good_1198.390
SRR6049659Rhizomagastrodiae_C368-T04_good_1231.050
SRR6049660Rhizomagastrodiae_C368-T01_good_1201.200
SRR6049661Rhizomagastrodiae_C368-T04_good_1191.300
SRR6049662Rhizomagastrodiae_C368-T01_good_1136.740
SRR6049663Rhizomagastrodiae_C368-T01_good_1166.750
SRR6049664Rhizomagastrodiae_C368-T10_good_1124.560
SRR6049665Rhizomagastrodiae_C368-T10_good_1124.560
SRP279888GastroGastrodia elata tuber 193.62
JuvenJuvenile tuber190.73
Mother_GastroMother tuber of Gastrodia elata 199.48
Mother_JuvenMother tuber of Juvenile 192.26