Detail information of GWHGAAEX006780/evm.TU.scaffold_19.99
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1601 | 5.00E-12 | GATA-4/5/6 transcription factors |
| nr | gi|743840556|ref|XP_010937294.1| | 5.18E-29 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9LRH6|GAT25_ARATH | 2.00E-12 | GATA transcription factor 25 |
| trEMBL | tr|M0S843|M0S843_MUSAM | 2.00E-23 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P15020_001} |
| TAIR | AT4G24470 | 5.00E-12 | GATA-type zinc finger protein with TIFY domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 2348415 | 2377511 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006780
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00320.26 | GATA | 35 | 69 | 1.00E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-GATA |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.480 |
| SRR2545915 | Juvenile tuber | 2.720 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.960 |
| SRR5643514 | five period of Gastrodia elata | 0.980 | |
| SRR5643515 | five period of Gastrodia elata | 0.300 | |
| SRR5643524 | five period of Gastrodia elata | 1.800 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 3.280 | |
| SRR5643658 | five period of Gastrodia elata | 3.470 | |
| SRR5643659 | five period of Gastrodia elata | 1.030 | |
| SRR5643660 | five period of Gastrodia elata | 1.140 | |
| SRR5643661 | five period of Gastrodia elata | 0.570 | |
| SRR5643662 | five period of Gastrodia elata | 1.170 | |
| SRR5643663 | five period of Gastrodia elata | 1.090 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.150 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.610 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.240 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.240 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.19 | |
| Mother_Juven | Mother tuber of Juvenile | 0.16 |