Gene detail

Detail information of GWHGAAEX006782/evm.TU.scaffold_19.101

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743850404\|ref\|XP_010939877.1\|	PREDICTED: uncharacterized protein LOC105058601 isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0UBM0\|M0UBM0_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP23120_001}
TAIR	AT2G38630	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	2395373	2404320	-

Transcript Sequence
>GWHTAAEX006782 ATGGAGAATCACAAGAGAAATGCTCTCCGACTGCGGGTTCGAGTGACGGCGAAGAAGCGAGGGAAGGAGCCGGAGTCATCCGCAGGGTCCTTGAAAAGGCCCAGGGAGAGAGAGTCCGTGAATTCGGTCACCAAGCTCCAGCGGCGCGAGATCGGAGGGTTTCCTAGAATCGCGCGGGGCACCTCGTCGAATGCACCTGAGAAATTCAGGAACATACAGCTCCAGGAAGAGTTTGATACTTACGATCACAACGTCCATTGGTTTTTAAAACTACAATTTCTTAAGAAGAGATCAAAGATTATAGAGATTGTTGCAGCAAAGGACGTTATATTCGCTCTCGCTCAGTCTGGCCTCTGCGCTGCCTTCAGCCGGGCAACCAACAAACGCATATGCTTCTTGAATATAAGCCCCGATGAAGTAATCCGAAGCCTTTTCTATAACAAGAACAACGAGTCCCTGATCACAGTCTCAGTTTATGCCTCGGACCACTTCAGCTCCTTGAAATGCCGAACCACTCCAATAGAATACATACGGAGAAATCAGCTTGACGCAGGATTCCCCCTTTTTGAGACCGAATCTCTGAAGTGGCCGGGTTTTGTAGAATTTGACGACGTCAATGGCAAAGTCCTCACCTATTCAGCTCAGGATGGAATTTACAAGGTTTTTGATCTGAAGAACTATTCCTTTTTGTACTCGATATCTGATAAAAATGTGCAGGAGATCAAGATCAGCCCAGGAATCATGCTGTTAATATACCGTAGAAGTCCGGGATTTGTTCCGTTGAAGATACTCTCTATCGAGGACGGCACGGTTTTGAAGTCCTTCAACCACCTGCTGCACCGCAACAAGAAGGTGGATTTCATTGAGCAGTTTAACGAGAAGCTACTGGTGAAGCAGGAGAACGAGAATCTTCAGATTCTAGATGTTAGGAATTCGGAGCTGACGGAGGTTGGGAAGACGCAGTTCATGACCCCGTCGGCGTTCATCTTCCTGTACGAGAATCATCTGTTCTTGACGTTCAGGAATCGAACGGTGGCTGTCTGGAATTTCCGGGGAGAACTTGTGACCTCCTTCGAAGACCACCTGCTGTGGCACCCTGATTGCAACACCAATAACATCTACATCACTAGCGACCAGGATCTAATCATCTCCTACTGCAAGTCAGAAGAGGGGTGCGAAGACGAAGCCGAAGGTACTCACTCCCCTACTATCCAATCTTTACACCTGTTGGATTCATCGTTTCCGCCCGTTCATGCAGTTTCAGCCGTCGGATCCATCAACATGAGCAACATATTGACAGGAAAGTGCATAGCCAAGATATCGGCGAATGACCCCTCCATACAGATAAGCCCACGCAAAAGGGGGGATGCTGGAAGGTCTTCCATTCGATGCACCGTTCGAGAAGCACTTGAAGATGTTACAGCGCTGTTCTATGATGAGGATAGGAATGAGATCTACACTGGAAACAAGCAGGGCTTGATTCATGTTTGGTCCAATTAG

Network for GWHGAAEX006782

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	45.030
SRP064423	SRR2545915	Juvenile tuber	51.020
SRP108465	SRR5643513	five period of Gastrodia elata	51.740
	SRR5643514	five period of Gastrodia elata	38.980
	SRR5643515	five period of Gastrodia elata	46.590
	SRR5643524	five period of Gastrodia elata	45.440
	SRR5643525	five period of Gastrodia elata	36.440
	SRR5643528	five period of Gastrodia elata	38.610
	SRR5643658	five period of Gastrodia elata	37.190
	SRR5643659	five period of Gastrodia elata	54.810
	SRR5643660	five period of Gastrodia elata	55.300
	SRR5643661	five period of Gastrodia elata	53.380
	SRR5643662	five period of Gastrodia elata	48.730
	SRR5643663	five period of Gastrodia elata	48.750
	SRR5643664	five period of Gastrodia elata	48.930
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	43.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	57.390
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	55.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	57.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	50.290
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.130
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	48.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.900
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.900
SRP279888	Gastro	Gastrodia elata tuber	48.38
	Juven	Juvenile tuber	69.93
	Mother_Gastro	Mother tuber of Gastrodia elata	63.52
	Mother_Juven	Mother tuber of Juvenile	66.30