Detail information of GWHGAAEX006786/evm.TU.scaffold_19.105
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|312137116|ref|YP_004004453.1| | 1.00E-53 | 30S ribosomal protein S2 [Methanothermus fervidus DSM 2088] |
| KOG | KOG0830 | 4.00E-148 | 40S ribosomal protein SA (P40)/Laminin receptor 1 |
| nr | gi|474222337|gb|EMS59326.1| | 1.82E-155 | 40S ribosomal protein SA [Triticum urartu] |
| Swissprot | tr|A5BUU4|RSSA_VITVI | 4.00E-150 | 40S ribosomal protein SA {ECO:0000255|HAMAP-Rule:MF_03015} |
| trEMBL | tr|W5E2W7|W5E2W7_WHEAT | 4.00E-156 | 40S ribosomal protein SA {ECO:0000256|HAMAP-Rule:MF_03015} |
| TAIR | AT3G04770 | 4.00E-148 | 40s ribosomal protein SA B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 2463861 | 2474426 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006786
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00318.19 | Ribosomal_S2 | 17 | 111 | 2.80E-13 |
| PF00318.19 | Ribosomal_S2 | 116 | 181 | 2.30E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02998 | RP-SAe, RPSA | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0015935 | Cellular Component | small ribosomal subunit |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 336.290 |
| SRR2545915 | Juvenile tuber | 331.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 321.410 |
| SRR5643514 | five period of Gastrodia elata | 316.830 | |
| SRR5643515 | five period of Gastrodia elata | 328.500 | |
| SRR5643524 | five period of Gastrodia elata | 319.790 | |
| SRR5643525 | five period of Gastrodia elata | 235.080 | |
| SRR5643528 | five period of Gastrodia elata | 275.880 | |
| SRR5643658 | five period of Gastrodia elata | 249.590 | |
| SRR5643659 | five period of Gastrodia elata | 358.300 | |
| SRR5643660 | five period of Gastrodia elata | 373.060 | |
| SRR5643661 | five period of Gastrodia elata | 409.020 | |
| SRR5643662 | five period of Gastrodia elata | 335.520 | |
| SRR5643663 | five period of Gastrodia elata | 324.500 | |
| SRR5643664 | five period of Gastrodia elata | 375.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 348.730 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 392.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 390.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 350.690 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 344.190 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 323.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 372.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 346.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 402.220 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 395.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 462.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 462.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 355.71 |
| Juven | Juvenile tuber | 414.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 184.00 | |
| Mother_Juven | Mother tuber of Juvenile | 288.63 |