Detail information of GWHGAAEX006788/evm.TU.scaffold_19.108


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|399146696|gb|AFP25470.1|2.77E-61ERF3 [Musa acuminata AAA Group]
Swissprottr|Q6K7E6|ERF1_ORYSJ2.00E-41Ethylene-responsive transcription factor 1
trEMBLtr|I7EXJ5|I7EXJ5_MUSAC1.00E-61ERF3 {ECO:0000313|EMBL:AFP25470.1}
TAIRAT1G539101.00E-31related to AP2 12

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002025024412504868-
Transcript Sequence

Network for GWHGAAEX006788

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00847.19AP2981462.20E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAP2/ERF-ERF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms290.460
SRR2545915Juvenile tuber237.890
SRP108465SRR5643513five period of Gastrodia elata413.500
SRR5643514five period of Gastrodia elata252.650
SRR5643515five period of Gastrodia elata620.510
SRR5643524five period of Gastrodia elata336.410
SRR5643525five period of Gastrodia elata519.960
SRR5643528five period of Gastrodia elata792.830
SRR5643658five period of Gastrodia elata169.950
SRR5643659five period of Gastrodia elata572.340
SRR5643660five period of Gastrodia elata388.940
SRR5643661five period of Gastrodia elata418.690
SRR5643662five period of Gastrodia elata531.710
SRR5643663five period of Gastrodia elata435.550
SRR5643664five period of Gastrodia elata850.780
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1457.040
SRR6049655Rhizomagastrodiae_C368-T10_good_1266.340
SRR6049656Rhizomagastrodiae_C368-T07_good_1326.350
SRR6049657Rhizomagastrodiae_C368-T07_good_1379.890
SRR6049658Rhizomagastrodiae_C368-T04_good_1284.950
SRR6049659Rhizomagastrodiae_C368-T04_good_1354.890
SRR6049660Rhizomagastrodiae_C368-T01_good_1531.380
SRR6049661Rhizomagastrodiae_C368-T04_good_1322.240
SRR6049662Rhizomagastrodiae_C368-T01_good_1197.240
SRR6049663Rhizomagastrodiae_C368-T01_good_1403.640
SRR6049664Rhizomagastrodiae_C368-T10_good_1282.950
SRR6049665Rhizomagastrodiae_C368-T10_good_1282.950
SRP279888GastroGastrodia elata tuber 301.07
JuvenJuvenile tuber257.90
Mother_GastroMother tuber of Gastrodia elata 1,074.44
Mother_JuvenMother tuber of Juvenile 864.87