Detail information of GWHGAAEX006792/evm.TU.scaffold_19.112
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530780662|ref|YP_008432470.1| | 2.00E-12 | hypothetical protein N186_05570 [Thermofilum sp. 1910b] |
| KOG | KOG1819 | 3.00E-15 | FYVE finger-containing proteins |
| nr | gi|695007532|ref|XP_009390315.1| | 1.02E-122 | PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate isoform X2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q0WUR5|FAB1A_ARATH | 1.00E-08 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A |
| trEMBL | tr|M0SA33|M0SA33_MUSAM | 3.00E-121 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P21920_001} |
| TAIR | 7301552 | 3.00E-15 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 2572367 | 2590087 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006792
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01363.20 | FYVE | 8 | 65 | 6.50E-15 |
| PF12796.6 | Ank_2 | 205 | 270 | 2.80E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 82.430 |
| SRR2545915 | Juvenile tuber | 63.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 44.720 |
| SRR5643514 | five period of Gastrodia elata | 46.190 | |
| SRR5643515 | five period of Gastrodia elata | 40.260 | |
| SRR5643524 | five period of Gastrodia elata | 44.900 | |
| SRR5643525 | five period of Gastrodia elata | 70.590 | |
| SRR5643528 | five period of Gastrodia elata | 67.480 | |
| SRR5643658 | five period of Gastrodia elata | 76.420 | |
| SRR5643659 | five period of Gastrodia elata | 38.590 | |
| SRR5643660 | five period of Gastrodia elata | 37.440 | |
| SRR5643661 | five period of Gastrodia elata | 35.860 | |
| SRR5643662 | five period of Gastrodia elata | 33.610 | |
| SRR5643663 | five period of Gastrodia elata | 36.240 | |
| SRR5643664 | five period of Gastrodia elata | 32.550 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 47.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 73.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 45.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 55.550 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 52.020 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 59.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 49.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 51.020 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 47.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 50.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 59.300 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 59.300 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 62.90 |
| Juven | Juvenile tuber | 56.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 56.50 | |
| Mother_Juven | Mother tuber of Juvenile | 49.40 |