Gene detail

Detail information of GWHGAAEX006797/evm.TU.scaffold_19.120

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0845	6.00E-28	Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116)
nr	gi\|672188765\|ref\|XP_008813662.1\|	4.13E-59	PREDICTED: putative GPI-anchored protein PB15E9.01c isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q9CAF4\|NUP1_ARATH	2.00E-28	Nuclear pore complex protein NUP1
trEMBL	tr\|A0A061FQH4\|A0A061FQH4_THECC	3.00E-35	Uncharacterized protein {ECO:0000313\|EMBL:EOY19316.1}
TAIR	AT3G10650	6.00E-28	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	2768466	2823547	-

Transcript Sequence
>GWHTAAEX006797 GCCTCCAGTATAACTGATTACTTAATCCGGCTTCAAGATCCAACCCCACTGCGGCAAACCCCTGCGAGCCATTCTTTCTCGCTTCCAGCCATGGCGACTGCGGAGCACGAAGGCGGCAAGGTCCGTAAGCGGTCGCTGCGGCGGCCTCCGATCACTCCCTACAACAGGCCTCTGTCCGCGATTCGTGGAGTTAATGCGTCGCAATTGGAGACGGTGGCGGGAGGGAGCCGATGGATTTCTAAGCTCGTTGATCCAGCAGCACGGGTTGTTTTCAATAGCGCATCTCGCCTATTCTCATCTGTTCTGCGCAAGGGCCTCACGGCTCCTCCTGGGAAAAACATCAGTACGATTGAAAAGATTCCGGGAGTGAAATCCTCACCTGAAGTAAAAGAGAAAATTGACAATCCCATTGATGTTATGCCCTCAATGCTCAATGATGAATGTGATAACTCTAAGCAAGGATTAATTTCTCAATCTGATGACATTTCAGATCTTGAACAACTAATCAAGCGGAGAAGCTTCTCTAGGGTTGAAACTGAGCGCTTGACCAAGCTATTGCAATTACCTGATGAACCATCTACTTTATCATTGGCAGACTTCAAGAACAAGGGAAAGATGGATGCTGATTCAAAGATCAAGCCAAGTTCTTCATTCCAAGTTGTCAATTATGAGGAAAATATAAAGGCAAATGCTTCAGCAATGGAAGGCCAAAGAGAACAACTTGTTAATCCTCACTTAAATGCGACTTCTGGAGTAATTGCCAATCATCCAGAGGAAGGTTTTGTCTCGCCAATACAAATTGCAAGAGCATACATGAGTTCTAAGCGTTCAAAAGCAGGCCCTTCTTCCCTTGGTTTGCAGAGTCAAATATGCCACGGGGATAAAATTTCACCCTCGAATTTGCCATTAGGAAACAGATTATCGAATGCCTCAATTTCATCCAGATTTGCTATGGGCTTCCCTATAATCCCTACGGAACCTGGGAATTGTATGACTCCAAAACTGCTTGACAGATCAGCATTGCATAAATTTCCGCACTCTCAGAATTGCAGGCCCTTCAAAATGACTAATCCCAAGGAATATAGTCCTTGCAATGACAGGTTCTCAGAGCCAACAAGGTCAATAGAATTGGCTTCGCCATTGCCAAATATCAGGCATTTGGGTCATGGGAAAGCATTGAAACGAGGTAGTGCAGATAGTGATGCAGAATTCTTTGCTGATGCACGAAGGGTTCGTCAAAAGTCATGTTTGAAGGACTCGGGTTTTCCAATTTGTGCAGATACTTCATCGACATTTAATCTTGGTCTAGAATTTAAACAAGATACTGATTTGAAGAGCTTAGAAAATCTAGATGACAGAATACCTTCTGCAAGTGTTCTCCATGTGCCTCCTCAGTCCATTGAGATGGCCAAAAAAATATTGCATCATCTTGATAACATAAAACCTTCTCCACGAAATAAAGTTGTTGAGAATAAAGTTAATGTTGGAGAAACTTCATTATCAAAAATATCAATTAGTCCTTTTTCTGGGAGTTCTCTAAAATGCAAGGGCAATGATGATTCAATTAGTTCAGTGTATGCTCAAGGAAGCAGAATTTTGGAAACCCCGAACAGTTCTAATTTAACTAGAATTGCAGGTATCTTGTCTTCTAATAAAGACAATACTAATGAGGAAGCCTCTCAATTGCCTTCTATTTCTGGAGCTGAGGTAGCAGTTTCATGCTCAGCAATGAAAAGTAATGTGACACCAGTCTTAGATGTTAACGATTCTGTGAGGTCCATGGATTTTAATAGTCATGGACTGGGCTCGCTTTCTAGGAACAAGGAGCTGACTGTACAGAGTGCTTTAGATGATAAAGTTTTCACAAACACAAAGGCTTCTGTAGAAGAACAAAGGAAGAAGCTGTCACATTCCCTTGCAGCACGTGCAAGCAGCACCTTGCCCAAGGCAATGTCTTCTATTGTAACAATACCCACTTTGGTTAACGAGGCTGCTCCAAATGAGGAAAACAGTGTCTCTTCATTCAAATTTGGTTCAATAAACTCATCTGATAATGTTACAAAGTCAGTATGCACGAGCATAAGTGTTCAAACCGGGGAAACCATAGTTGACCGCCCAACATCAAAGTTTGACAAAGGGGTTTTGGCAAGCACCTCTTCCAGCTCAAGCAGTGCATTTTCCACTTCTGTTTCACCCGCATTCCAATTTGGGTCAGGAAATTCAAACTTCTTTTCCTTCGCAGGTTTTCCAGCAATTTCTTCAAAGTCAGCAGGCACCATAGAGCCGAAGTTCCAATTTGGGTCCAGCAATTCATCAAGCAATTCCTTGTCAGGTTTGTCAACTATCTGTTCTAGTTCAAGCACAGGCAGTAGAGCATCTACTCCAGCATTTTCATCAGCATATCTAATCACTAAAGGCAGTGATTGTTTGCCAACTACCTCCATCTTTTCAATACCGACAAACCGAGTTTTTGGCACCAGCTCTTGCTCAACATCTGGTGGTTCAAACTCACAGTCTTCAGATACTTCCGCGCCTCAGGTTGGCATGTTGGAAACACCTGCAGCTTTTGGGCTCAGTTCTTCGCGACAAGCTGCTTTGGGCTCTGTTGTTCATCTGAAGGACCCTCCTTCATCAAATGATCAAACGGCTGTTATGGATAATAGCAGGACTGGCAGCAATCTCAAATCAGCTGATCCCATGGCTACAACACTGGGCCAACCAACTAGCAGACTCCAACTAAATCCTCCTACTGGAGCTCTAGTTTTCCAGAATAACGCTGCTCCTCAGAACCCTTCTCCATTGCTAGGGTTTTCAGCTGGGAACGGCTTCTCTTTGGGCAGCGGAGGCAGCGAACAGTCTCAGCGGAAATTCATCAAGGTTCGGCGGGACAATAAACTCGGGAGAAAGTAGCAAGTATGGAAAGTCTTCTGGGAATTCTTTATTTTATTTTAATTTTTTTTTTATATTCTGCTGTTGAAACTTAGAATCTTTAAGTAAATCTTTACTAGTTATGTAAGTTTTAGCAATTTTTTTTCATGATTGCAGTATCTCATTTCTCTTTACGGTTCAGAGGTTTGATTGAGAGGCAAATTAGCCTCTGTTGTTGCAGTGCAAGTAAATTGGTCATTCCTTTCATAATATCTTTCAATGTTACCTTCTCGTGGTCGTTCTTT

Network for GWHGAAEX006797

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	28.650
SRP064423	SRR2545915	Juvenile tuber	23.760
SRP108465	SRR5643513	five period of Gastrodia elata	13.500
	SRR5643514	five period of Gastrodia elata	13.650
	SRR5643515	five period of Gastrodia elata	13.410
	SRR5643524	five period of Gastrodia elata	12.360
	SRR5643525	five period of Gastrodia elata	9.060
	SRR5643528	five period of Gastrodia elata	11.170
	SRR5643658	five period of Gastrodia elata	8.480
	SRR5643659	five period of Gastrodia elata	12.080
	SRR5643660	five period of Gastrodia elata	15.090
	SRR5643661	five period of Gastrodia elata	11.340
	SRR5643662	five period of Gastrodia elata	10.780
	SRR5643663	five period of Gastrodia elata	12.640
	SRR5643664	five period of Gastrodia elata	13.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.410
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.690
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	21.900
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.720
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.930
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.930
SRP279888	Gastro	Gastrodia elata tuber	17.29
	Juven	Juvenile tuber	32.34
	Mother_Gastro	Mother tuber of Gastrodia elata	18.23
	Mother_Juven	Mother tuber of Juvenile	26.78