Detail information of GWHGAAEX006798/evm.TU.scaffold_19.121
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|15678268|ref|NP_275383.1| | 5.00E-32 | replication factor C large subunit [Methanothermobacter thermautotrophicus str. Delta H] |
| KOG | KOG1968 | 8.00E-117 | Replication factor C, subunit RFC1 (large subunit) |
| nr | gi|672109446|ref|XP_008790175.1| | 0 | PREDICTED: replication factor C subunit 1 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q2R2B4|RFC1_ORYSJ | 0 | Replication factor C subunit 1 |
| trEMBL | tr|M0SNY7|M0SNY7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P14720_001} |
| TAIR | HS15011931 | 8.00E-117 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 2831615 | 2857312 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006798
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00533.25 | BRCT | 212 | 287 | 4.10E-16 |
| PF00004.28 | AAA | 404 | 516 | 3.10E-09 |
| PF08519.11 | RFC1 | 677 | 840 | 5.30E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10754 | RFC1 | DNA replication | map03030 |
| Nucleotide excision repair | map03420 | ||
| Mismatch repair | map03430 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0006260 | Biological Process | DNA replication |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003689 | Molecular Function | DNA clamp loader activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005663 | Cellular Component | DNA replication factor C complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 50.040 |
| SRR2545915 | Juvenile tuber | 47.310 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 43.790 |
| SRR5643514 | five period of Gastrodia elata | 39.740 | |
| SRR5643515 | five period of Gastrodia elata | 39.740 | |
| SRR5643524 | five period of Gastrodia elata | 40.750 | |
| SRR5643525 | five period of Gastrodia elata | 28.110 | |
| SRR5643528 | five period of Gastrodia elata | 20.640 | |
| SRR5643658 | five period of Gastrodia elata | 23.350 | |
| SRR5643659 | five period of Gastrodia elata | 33.680 | |
| SRR5643660 | five period of Gastrodia elata | 37.720 | |
| SRR5643661 | five period of Gastrodia elata | 33.440 | |
| SRR5643662 | five period of Gastrodia elata | 33.670 | |
| SRR5643663 | five period of Gastrodia elata | 34.810 | |
| SRR5643664 | five period of Gastrodia elata | 37.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.330 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 43.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 41.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 45.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 38.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 37.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 30.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 32.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.91 |
| Juven | Juvenile tuber | 37.60 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 48.75 | |
| Mother_Juven | Mother tuber of Juvenile | 46.07 |