Detail information of GWHGAAEX006799/evm.TU.scaffold_19.122


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08003.00E-45FOG: Predicted E3 ubiquitin ligase
nrgi|672109440|ref|XP_008790136.1|1.06E-152PREDICTED: E3 ubiquitin-protein ligase RHF2A [Phoenix dactylifera]
Swissprottr|Q9ZT42|RHF2A_ARATH1.00E-124E3 ubiquitin-protein ligase RHF2A
trEMBLtr|M0S6B9|M0S6B9_MUSAM2.00E-148Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P08780_001}
TAIRAT4G142203.00E-45RING-H2 group F1A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002028582932870255-
Transcript Sequence

Network for GWHGAAEX006799

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_229704.40E-10
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms24.200
SRR2545915Juvenile tuber29.540
SRP108465SRR5643513five period of Gastrodia elata17.180
SRR5643514five period of Gastrodia elata17.620
SRR5643515five period of Gastrodia elata14.940
SRR5643524five period of Gastrodia elata18.730
SRR5643525five period of Gastrodia elata19.840
SRR5643528five period of Gastrodia elata33.460
SRR5643658five period of Gastrodia elata20.330
SRR5643659five period of Gastrodia elata11.920
SRR5643660five period of Gastrodia elata13.600
SRR5643661five period of Gastrodia elata14.220
SRR5643662five period of Gastrodia elata13.390
SRR5643663five period of Gastrodia elata10.570
SRR5643664five period of Gastrodia elata9.720
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.770
SRR6049655Rhizomagastrodiae_C368-T10_good_120.460
SRR6049656Rhizomagastrodiae_C368-T07_good_125.420
SRR6049657Rhizomagastrodiae_C368-T07_good_116.570
SRR6049658Rhizomagastrodiae_C368-T04_good_129.320
SRR6049659Rhizomagastrodiae_C368-T04_good_124.980
SRR6049660Rhizomagastrodiae_C368-T01_good_119.380
SRR6049661Rhizomagastrodiae_C368-T04_good_120.140
SRR6049662Rhizomagastrodiae_C368-T01_good_125.720
SRR6049663Rhizomagastrodiae_C368-T01_good_126.690
SRR6049664Rhizomagastrodiae_C368-T10_good_136.750
SRR6049665Rhizomagastrodiae_C368-T10_good_136.750
SRP279888GastroGastrodia elata tuber 13.70
JuvenJuvenile tuber13.88
Mother_GastroMother tuber of Gastrodia elata 23.89
Mother_JuvenMother tuber of Juvenile 30.40