Detail information of GWHGAAEX006801/evm.TU.scaffold_19.125
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428779294|ref|YP_007171080.1| | 0 | carotene isomerase [Dactylococcopsis salina PCC 8305] |
| KOG | KOG4254 | 0 | Phytoene desaturase |
| nr | gi|75282666|sp|Q52QW2.1|CRTS2_ONCHC | 0 | RecName: Full=Prolycopene isomerase 2, chloroplastic; Short=CrtISO2; AltName: Full=Carotenoid isomerase 2; AltName: Full=OcrtISO24; Flags: Precursor [Oncidium hybrid cultivar] |
| Swissprot | tr|Q52QW2|CRTS2_ONCHC | 0 | Prolycopene isomerase 2, chloroplastic (Precursor) |
| trEMBL | tr|M0TTX0|M0TTX0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P26670_001} |
| TAIR | AT1G06820 | 0 | carotenoid isomerase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 2917839 | 2979076 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006801
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01593.23 | Amino_oxidase | 79 | 442 | 1.20E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09835 | crtISO, crtH | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Carotenoid biosynthesis | map00906 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016117 | Biological Process | carotenoid biosynthetic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0046608 | Molecular Function | carotenoid isomerase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.040 |
| SRR2545915 | Juvenile tuber | 14.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.630 |
| SRR5643514 | five period of Gastrodia elata | 6.520 | |
| SRR5643515 | five period of Gastrodia elata | 6.150 | |
| SRR5643524 | five period of Gastrodia elata | 5.800 | |
| SRR5643525 | five period of Gastrodia elata | 6.240 | |
| SRR5643528 | five period of Gastrodia elata | 6.170 | |
| SRR5643658 | five period of Gastrodia elata | 6.140 | |
| SRR5643659 | five period of Gastrodia elata | 5.550 | |
| SRR5643660 | five period of Gastrodia elata | 5.660 | |
| SRR5643661 | five period of Gastrodia elata | 5.830 | |
| SRR5643662 | five period of Gastrodia elata | 7.730 | |
| SRR5643663 | five period of Gastrodia elata | 6.360 | |
| SRR5643664 | five period of Gastrodia elata | 7.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.180 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.73 |
| Juven | Juvenile tuber | 5.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.91 | |
| Mother_Juven | Mother tuber of Juvenile | 4.38 |