Detail information of GWHGAAEX006804/evm.TU.scaffold_19.127
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|262194494|ref|YP_003265703.1| | 0 | glycoside hydrolase [Haliangium ochraceum DSM 14365] |
| nr | gi|695061082|ref|XP_009418960.1| | 0 | PREDICTED: lysosomal beta glucosidase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FLG1|BXL4_ARATH | 6.00E-33 | Beta-D-xylosidase 4 (Precursor) |
| trEMBL | tr|M0TZ54|M0TZ54_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P10450_001} |
| TAIR | AT5G20950 | 0 | Glycosyl hydrolase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 3028721 | 3043935 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006804
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00933.20 | Glyco_hydro_3 | 48 | 376 | 2.90E-67 |
| PF01915.21 | Glyco_hydro_3_C | 413 | 621 | 2.50E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH3 |
| Carbohydrate-Active enzymes Family | GH3 |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.950 |
| SRR2545915 | Juvenile tuber | 2.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.630 |
| SRR5643514 | five period of Gastrodia elata | 12.220 | |
| SRR5643515 | five period of Gastrodia elata | 8.440 | |
| SRR5643524 | five period of Gastrodia elata | 11.410 | |
| SRR5643525 | five period of Gastrodia elata | 6.980 | |
| SRR5643528 | five period of Gastrodia elata | 2.820 | |
| SRR5643658 | five period of Gastrodia elata | 13.510 | |
| SRR5643659 | five period of Gastrodia elata | 0.410 | |
| SRR5643660 | five period of Gastrodia elata | 0.300 | |
| SRR5643661 | five period of Gastrodia elata | 0.340 | |
| SRR5643662 | five period of Gastrodia elata | 0.240 | |
| SRR5643663 | five period of Gastrodia elata | 0.530 | |
| SRR5643664 | five period of Gastrodia elata | 0.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.110 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.600 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.510 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.72 |
| Juven | Juvenile tuber | 1.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.31 | |
| Mother_Juven | Mother tuber of Juvenile | 0.78 |