Gene detail

Detail information of GWHGAAEX006806/evm.TU.scaffold_19.130

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743824039\|ref\|XP_010932674.1\|	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105053268 [Elaeis guineensis]
trEMBL	tr\|M0SLZ6\|M0SLZ6_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P07790_001}
TAIR	AT3G17900	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	3180352	3190361	-

Transcript Sequence
>GWHTAAEX006806 ATGGTTAAACTGGGTAAAAGAGCACTGGAAGATTCATACAAATACTTCAAGGTTGTGGATTATGGCACAAAATGCAGAGGGTTCTCTCAAGTTTTCCTATTCCATGCAGCAGGCTCTGTATACTTTGCAATGTTTCTGCTGCGGAATACACATCCTGTTGTTCCGGATCTACCTACTATTTCAGAAAACAAACTTTCCAAGGATGCAAGAACTAATCCAAAATCAGCGGTCACATTGGAGGGCCTTATGGCAGGAGATTCATTTCCAACAGAAAATAGTGATAAAGATAATAATCTAAGTGGTGAATCTACATTTCACACTTCCAAATATCATACCGAAATTGGAAACCACTCAGATGTTCTTGAAAGTGAAGGATGGATAACAATTCCCAAAAGTAAAGTTCCTGATGATTGGTTTCATGCATCAAATGTACAGCAGTTGCGCTCTTTGGACAGGTCTTTTGTTTTCTCTGGTGAGCAGCTTCATTTATTGGTATGCTTATCAGCAGCTACTCAGGATGAAGAAGTAACTAGTACATTCAGAGCTTCTGGAGTCATCTCAAAATCTGAAAATTGTACACAGCTTATAAAGGATAAAATTGAGGCTTCATCGAGCGCTTCTTCTGTCAGCGGTAAAGTGGATGTAAATGCTGGTTCAAGTGAATGCAATGATCGAACTTTACATGTTACTGAGAAGAGAGGTTCCGAGCAGGATGCAACTGCTACCAAATCTTTGCTTGGAAGGGAAGATAATAAACATCAGAAAGAAACACTTCTTGAAAAATTTAGATGTTCTAACTTCTTTGTACGAGTTGCCGAGTCTGATGAGCCTCTATGGTATAAAAGATCTTCCGCAGAATCATCTTCAACAAACTCAGATATGGCTGGAGGAATATTCCATGCAAAAGATGTTGCTGAAAGAAAAGAAAGCTGTAATTTTCTGAGCGCTGTTATTGATCAAGGAAAATTTGACAGCAATGCTTCTGGTGGGATGGCCAGGGACGTTAGATGCTACTCTTTGTCCAACGGTGACTTAGTGGTTCTTTTGCAAGTAAATGTAGCAACTTCCAATACAAAGGATCCTGTGCTTGAAGTCCTTCAGTTTGAAAAGTACAGAGCTTCAGTTCCTTATGACAGCTCATTTGATTTGCATTCTTCAACTCATCATGATCCATGCGGGGAACTTCTCAATTGGTTGCTGCCTTTGGACCGCACTTTACCTCCTCATTCATTTATGCCTCCATTAGGGCAATCCCCATCTGTTGCTACTCACAGGTCCACATCTTCCTATTCTGGCTCACCAATTTTCTCTTTTGGCCAGTTCAGAAGTTACTCCATGTCATCGCTCCCACAAGACAGCACACTGTCTGCTTCTGCTACTCACAGCTCGAAGCCGTCCTTCGATCTTGAAGATTTAGATTGTTTGGCACTGGAGAAGTTGAAGAATCATGATATGGAAAATGAGGGTCTTTTGTCATTTCGGGGTGTTTCTCTTGTACCAGAACGATTTTCTGTTCATTGTGGTTTTGAAGGTATTTACTTGCCCGGCAGGCGATGGTGCAGAAAGATCGAAATTGTCCAACCGTTGGAGATTCACAGTATTGCCTCCGCATGCACTACTGAGGATCTTCTGTGCGTTCAGATCAAGAATGTTTTGCCAGCGCATTTACCCGATATTACTATATTCTTGGATTCAATTACTATTGTATACGATGAACCAACAAGAGGAAGTTCACCTCTTTGTCTACCACTTGCCAGCATTGAAACGGGAGACTGTCACACCTTACCGAATCTTCCACTCAGGAGAGGTGAGGAGCATTCTTTTATTATGAAGCTGGTGACCCAACTAGAAGGGAATCTCAATGACCATGTTCCACAGTCTACGGGTTTGAATTCAAAGACAGGCACATCTGCATTTGGCTCAACTTCAAAGAAGAGTGAATTGAAAAAGACTCCAAGAAATACAGATCAGTGTGCGGTTTTGGTATCCTGTCGTTGCAATTATACTGAATCGAAATTATTTTTCAAGCATAGAACAAGTTGGCGTCCACGCATTGCCAAGGATCTCATCATCTCTGTAGCTTCCGAGGTGTCAGATCGCATGGCCAAATCAACAAAAATACCACAACTGCCTGTTCAGGTGTTAACCCTCCATGCCTCAAACCTAACATCTGAAGACCTCAATCTCACTGTTATGACTTCACTGTCATCTGCTTCCTCCCATTCTGCGGCACCTCTGAGCTCCTCTGCACCAAGAACTATTGCAAATGTTCTACAGGGTTTCTCCTCCGAAGAAGGAAGATTAAACAGAGATAGAAAATCAAATTTATTGATGACTGAAGATCAGAAGGCTAATAATGATGGTGATGATGGCAAAAGATTTACTTCTGATATTATTTCTGGCACAGATCGTGCATGCACTCATCTTTGGCTGCAAAGCACAGTTCCCTTGGGTGTTGTACATGCACATTCGAGCACCAGCGTCAAACTCGAGTTACTCCCTTTGACTGATGGGATTATTACTCTGGACACACTGCAAGTAGCTGTTCAAGAGAAAGGTTTAACCTACATTCCAGAGCAGCCATTGAAGATCTATGCTACCTCCAGCATCGCTACAGGACCTGCTTAA

Network for GWHGAAEX006806

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.730
SRP064423	SRR2545915	Juvenile tuber	18.230
SRP108465	SRR5643513	five period of Gastrodia elata	10.450
	SRR5643514	five period of Gastrodia elata	10.670
	SRR5643515	five period of Gastrodia elata	10.970
	SRR5643524	five period of Gastrodia elata	10.050
	SRR5643525	five period of Gastrodia elata	18.140
	SRR5643528	five period of Gastrodia elata	23.290
	SRR5643658	five period of Gastrodia elata	18.060
	SRR5643659	five period of Gastrodia elata	9.610
	SRR5643660	five period of Gastrodia elata	10.600
	SRR5643661	five period of Gastrodia elata	9.440
	SRR5643662	five period of Gastrodia elata	10.750
	SRR5643663	five period of Gastrodia elata	9.250
	SRR5643664	five period of Gastrodia elata	9.120
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	13.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	14.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.490
SRP279888	Gastro	Gastrodia elata tuber	9.98
	Juven	Juvenile tuber	10.64
	Mother_Gastro	Mother tuber of Gastrodia elata	17.19
	Mother_Juven	Mother tuber of Juvenile	17.17