Detail information of GWHGAAEX006809/evm.TU.scaffold_19.133
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336178998|ref|YP_004584373.1| | 3.00E-11 | serine/threonine protein kinase with PASTA sensor(s) [Frankia symbiont of Datisca glomerata] |
| KOG | KOG1290 | 0 | Serine/threonine protein kinase |
| nr | gi|743774680|ref|XP_010917701.1| | 0 | PREDICTED: SRSF protein kinase 1-like [Elaeis guineensis] |
| Swissprot | tr|P51567|AFC2_ARATH | 6.00E-24 | Serine/threonine-protein kinase AFC2 |
| trEMBL | tr|K4A7P4|K4A7P4_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si034900m} |
| TAIR | AT3G53030 | 0 | ser/arg-rich protein kinase 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 3270825 | 3293932 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006809
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 41 | 181 | 5.90E-20 |
| PF00069.24 | Pkinase | 294 | 455 | 3.10E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | CMGC_SRPK |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.580 |
| SRR2545915 | Juvenile tuber | 20.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.590 |
| SRR5643514 | five period of Gastrodia elata | 16.400 | |
| SRR5643515 | five period of Gastrodia elata | 18.060 | |
| SRR5643524 | five period of Gastrodia elata | 18.040 | |
| SRR5643525 | five period of Gastrodia elata | 16.560 | |
| SRR5643528 | five period of Gastrodia elata | 16.020 | |
| SRR5643658 | five period of Gastrodia elata | 15.150 | |
| SRR5643659 | five period of Gastrodia elata | 21.150 | |
| SRR5643660 | five period of Gastrodia elata | 20.290 | |
| SRR5643661 | five period of Gastrodia elata | 21.670 | |
| SRR5643662 | five period of Gastrodia elata | 22.130 | |
| SRR5643663 | five period of Gastrodia elata | 20.480 | |
| SRR5643664 | five period of Gastrodia elata | 19.100 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.230 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.920 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.510 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 14.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.140 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.140 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.78 |
| Juven | Juvenile tuber | 19.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.68 | |
| Mother_Juven | Mother tuber of Juvenile | 11.46 |